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Refactor InferelatorJL + add evaluation pipeline#1

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sheyiphunmi wants to merge 7 commits intomainfrom
dev-refactor
Open

Refactor InferelatorJL + add evaluation pipeline#1
sheyiphunmi wants to merge 7 commits intomainfrom
dev-refactor

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Summary

Major refactor of InferelatorJL repository.

Changes

  • Restructured codebase into modular src/ layout
  • Added evaluation pipeline (R-based GRN benchmarking tools)
  • Introduced metrics and visualization utilities
  • Cleaned legacy structure

Notes

This is a large architectural update (dev-refactor branch).
Please review carefully before merging.

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