Remove duplicate jules metadata in UM repository

rose-meta/jules-lfric/HEAD/rose-meta.conf

@@ -8,7 +8,8 @@
 #
 # This file is imported by jules-lsm in the LFRic apps repository.
 #
-# Please see jules:wiki:SharingJULESmetadata
+# Please see https://github.com/MetOffice/jules/wiki/Sharing-JULES-metadata
+###############################################################################
 
 import=jules-shared/jules-hydrology/HEAD
       =jules-shared/jules-nvegparm/HEAD
@@ -632,6 +633,7 @@ trigger=
 type=logical
 
 [namelist:jules_vegetation=can_rad_mod]
+trigger=namelist:jules_pftparm=knl_io: 'six';
 values='one','four','five','six'
 
 [namelist:jules_vegetation=l_inferno]

rose-meta/jules-shared/jules-deposition-species-specific/HEAD/rose-meta.conf

@@ -0,0 +1,87 @@
+[namelist:jules_deposition_species_specific]
+compulsory=true
+description=Deposition parameters that depend on species
+ns=namelist/JULES Science Settings/jules_deposition/jules_deposition_species_specific
+title=Deposition Species Specific
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#namelist-JULES_DEPOSITION_SPECIES
+
+[namelist:jules_deposition_species_specific=ch4_mml_io]
+compulsory=true
+description=Factor to convert methane flux to dry dep velocity
+range=0:
+sort-key=02b
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::ch4_mml_io
+
+[namelist:jules_deposition_species_specific=ch4_scaling_io]
+compulsory=true
+description=Scaling applied to CH4 soil uptake
+range=0:
+sort-key=02a
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::ch4_scaling_io
+
+[namelist:jules_deposition_species_specific=ch4_up_flux_io]
+compulsory=true
+description=Uptake of methane to different surface types
+fail-if=len(this) != (namelist:jules_surface_types=npft)+(namelist:jules_surface_types=nnvg)
+length=:
+range=0:
+sort-key=02c
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::ch4_up_flux_io
+
+[namelist:jules_deposition_species_specific=ch4dd_tundra_io]
+compulsory=true
+description=Coefficients of cubic fit for CH4 loss to tundra
+fail-if=any(this == -1073741824.0) ; # Invalid parameter value(s)
+length=4
+sort-key=02d
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::ch4dd_tundra_io
+
+[namelist:jules_deposition_species_specific=cuticle_o3_io]
+compulsory=true
+description=Constant in calculation of cuticular resistance for ozone (s m-1)
+range=0:1.0e+30
+sort-key=1a
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::cuticle_o3_io
+
+[namelist:jules_deposition_species_specific=h2dd_c_io]
+compulsory=true
+description=Constant in quadratic function for hydrogen deposition
+fail-if=len(this) != (namelist:jules_surface_types=npft)+(namelist:jules_surface_types=nnvg)
+       =any(this == -1073741824.0) ; # Invalid parameter value(s)
+length=:
+sort-key=03a
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::h2dd_c_io
+
+[namelist:jules_deposition_species_specific=h2dd_m_io]
+compulsory=true
+description=Coefficient of first order term in quadratic function for hydrogen deposition
+fail-if=len(this) != (namelist:jules_surface_types=npft)+(namelist:jules_surface_types=nnvg)
+       =any(this == -1073741824.0) ; # Invalid parameter value(s)
+length=:
+sort-key=03b
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::h2dd_m_io
+
+[namelist:jules_deposition_species_specific=h2dd_q_io]
+compulsory=true
+description=Coefficient of second order term in quadratic function for hydrogen deposition
+fail-if=len(this) != (namelist:jules_surface_types=npft)+(namelist:jules_surface_types=nnvg)
+       =any(this == -1073741824.0) ; # Invalid parameter value(s)
+length=:
+sort-key=03c
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::h2dd_q_io
+
+[namelist:jules_deposition_species_specific=r_wet_soil_o3_io]
+compulsory=true
+description=Wet soil surface resistance for ozone (s m-1)
+range=0:1.0e+30
+sort-key=01b
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::r_wet_soil_o3_io

rose-meta/jules-shared/jules-deposition-species/HEAD/rose-meta.conf

@@ -0,0 +1,69 @@
+[namelist:jules_deposition_species]
+compulsory=true
+description=Deposition parameters that depend on species
+duplicate=true
+ns=namelist/JULES Science Settings/jules_deposition/jules_deposition_species
+title=Deposition Species
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#namelist-JULES_DEPOSITION_SPECIES
+
+[namelist:jules_deposition_species=dd_ice_coeff_io]
+compulsory=true
+description=Coefficients for quadratic dependency of dry deposition to ice
+fail-if=any(this == -1073741824.0) ; # Invalid parameter value(s)
+length=3
+sort-key=6
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::dd_ice_coeff_io
+
+[namelist:jules_deposition_species=dep_species_name_io]
+compulsory=true
+description=Name of chemical species to be deposited
+fail-if=(this == "'unset'") ; # Invalid name for deposited species
+sort-key=01
+trigger=namelist:jules_deposition_species=dd_ice_coeff_io: this == "'SO2'" or this == "'HNO3'" or this == "'HONO2'" or this == "'ISON'" or this == "'HCl'" or this == "'HOCl'" or this == "'HBr'" or this == "'HOBr'" ;
+       =namelist:jules_deposition_species=diffusion_corr_io: this == "'NO2'" or this == "'O3'" or this == "'SO2'" or this == "'NH3'" or this == "'PAN'" or this == "'MPAN'" or this == "'PPAN'" or this == "'ONITU'" ;
+       =namelist:jules_deposition_species=r_tundra_io: this == "'NO2'" or this == "'O3'" or this == "'CO'" or this == "'H2'" or this == "'PAN'" or this == "'MPAN'" or this == "'PPAN'" or this == "'ONITU'" ;
+type=character
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::dep_species_name_io
+
+[namelist:jules_deposition_species=dep_species_rmm_io]
+compulsory=true
+description=Relative molecular mass (g mol-1), used in calculation of quasi-laminar resistance (Rb)
+range=0:
+sort-key=02a
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::dep_species_rmm_io
+
+[namelist:jules_deposition_species=diffusion_coeff_io]
+compulsory=true
+description=Diffusion coefficient (m2 s-1), used in calculation of quasi-laminar resistance (Rb)
+range=-1,0:
+sort-key=02b
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::diffusion_coeff_io
+
+[namelist:jules_deposition_species=diffusion_corr_io]
+compulsory=true
+description=Diffusion correction for stomatal conductance
+range=0:
+sort-key=04
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::diffusion_corr_io
+
+[namelist:jules_deposition_species=r_tundra_io]
+compulsory=true
+description=Surface resistance used in tundra region (s m-1)
+range=0:1.0e+30
+sort-key=05
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::r_tundra_io
+
+[namelist:jules_deposition_species=rsurf_std_io]
+compulsory=true
+description=Standard values of surface resistance (s m-1)
+fail-if=len(this) != (namelist:jules_surface_types=npft)+(namelist:jules_surface_types=nnvg)
+length=:
+range=0:1.0e+30
+sort-key=03
+type=real
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION_SPECIES::rsurf_std_io

rose-meta/jules-shared/jules-deposition/HEAD/rose-meta.conf

@@ -0,0 +1,139 @@
+[namelist:jules_deposition]
+compulsory=true
+description=Configuration of atmospheric deposition
+ns=namelist/JULES Science Settings/jules_deposition
+title=Deposition
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#namelist-JULES_DEPOSITION
+
+[namelist:jules_deposition=dep_h2_soil_scheme]
+compulsory=true
+description=Scheme for H2 soil deposition
+fail-if=( this == 2 and namelist:jules_model_environment=l_jules_parent == 1 ) ; # The Paulot et al. H2 scheme is not yet fully implemented for UM-coupled JULES applications (when JULES deposition called from UKCA): only Conrad & Seiler scheme available, dep_h2_soil_scheme = 1
+sort-key=5f
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::dep_h2_soil_scheme
+value-titles=Conrad & Seiler H2 deposition scheme,Paulot et al. H2 deposition scheme
+values=1,2
+
+[namelist:jules_deposition=dry_dep_model]
+compulsory=true
+description=Dry deposition model
+sort-key=2
+trigger=namelist:jules_deposition_species=dd_ice_coeff_io: 2;
+       =namelist:jules_deposition_species=dep_species_name_io: 1,2;
+       =namelist:jules_deposition_species=dep_species_rmm_io: 2;
+       =namelist:jules_deposition_species=diffusion_coeff_io: 2;
+       =namelist:jules_deposition_species=diffusion_corr_io: 2;
+       =namelist:jules_deposition_species=r_tundra_io: 2;
+       =namelist:jules_deposition_species=rsurf_std_io: 2;
+       =namelist:jules_deposition_species_specific=ch4_mml_io: 2;
+       =namelist:jules_deposition_species_specific=ch4_scaling_io: 2;
+       =namelist:jules_deposition_species_specific=ch4_up_flux_io: 2;
+       =namelist:jules_deposition_species_specific=ch4dd_tundra_io: 2;
+       =namelist:jules_deposition_species_specific=cuticle_o3_io: 2;
+       =namelist:jules_deposition_species_specific=h2dd_c_io: 2;
+       =namelist:jules_deposition_species_specific=h2dd_m_io: 2;
+       =namelist:jules_deposition_species_specific=h2dd_q_io: 2;
+       =namelist:jules_deposition_species_specific=r_wet_soil_o3_io: 2;
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::dry_dep_model
+value-titles=JULES with restricted UKCA deposition,JULES with flexible UKCA deposition
+values=1,2
+widget[rose-config-edit]=cylc8_compat.ComboBoxValueWidget
+
+[namelist:jules_deposition=dzl_const]
+compulsory=true
+description=Constant separation for boundary layer levels (m)
+range=0:
+sort-key=6
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::dzl_const
+
+[namelist:jules_deposition=l_deposition]
+compulsory=true
+description=Switch to enable JULES-based atmospheric dry deposition
+fail-if=(this == '.true.' and namelist:jules_surface=l_aggregate == ".true.") ; # Deposition does not work with aggregated tile
+sort-key=1
+trigger=namelist:jules_deposition=dep_h2_soil_scheme: .true.;
+       =namelist:jules_deposition=dry_dep_model: .true.;
+       =namelist:jules_deposition=dzl_const: .true.;
+       =namelist:jules_deposition=l_deposition_flux: .true.;
+       =namelist:jules_deposition=l_deposition_gc_corr: .true.;
+       =namelist:jules_deposition=l_ukca_ddep_lev1: .true.;
+       =namelist:jules_deposition=l_ukca_ddepo3_ocean: .true.;
+       =namelist:jules_deposition=l_ukca_dry_dep_so2wet: .true.;
+       =namelist:jules_deposition=l_ukca_emsdrvn_ch4: .true.;
+       =namelist:jules_deposition=ndry_dep_species: .true.;
+       =namelist:jules_deposition=tundra_s_limit: .true.;
+       =namelist:jules_deposition_species: .true.;
+       =namelist:jules_deposition_species_specific: .true.;
+       =namelist:jules_temp_fixes=l_fix_drydep_so2_water: .true.;
+       =namelist:jules_temp_fixes=l_fix_improve_drydep: .true.;
+       =namelist:jules_temp_fixes=l_fix_ukca_h2dd_x: .true.;
+type=logical
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::l_deposition
+
+[namelist:jules_deposition=l_deposition_flux]
+compulsory=true
+description=Switch to enable calculation of deposition fluxes
+sort-key=4a
+type=logical
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::l_deposition_flux
+
+[namelist:jules_deposition=l_deposition_from_ukca]
+compulsory=true
+description=Switch to call JULES-based deposition routines from ukca_chemistry_ctl
+fail-if=( this == '.false.' and namelist:jules_model_environment=l_jules_parent == 1 ) ; # For UM_JULES applications, only the call to the deposition routines from the UKCA is currently available
+       =( this == '.true.' and namelist:jules_model_environment=l_jules_parent == 0 ) ; # Deposition switch cannot be true in JULES standalone as JULES-based deposition routines called from UKCA
+sort-key=5a
+type=logical
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::l_deposition_from_ukca
+
+[namelist:jules_deposition=l_deposition_gc_corr]
+compulsory=true
+description=Switch to correct stomatal conductance for bare soil evaporation
+fail-if=( this == '.true.' and namelist:jules_model_environment=l_jules_parent == 1 ) ; # For UM_JULES applications, stomatal conductance corrected for bare soil evaporation is not available in the UKCA
+sort-key=4b
+type=logical
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::l_deposition_gc_corr
+
+[namelist:jules_deposition=l_ukca_ddep_lev1]
+compulsory=true
+description=Apply dry deposition losses only from the lowest level (true) or all levels (false) in the atmospheric boundary layer
+sort-key=5b
+type=logical
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::l_ukca_ddep_lev1
+
+[namelist:jules_deposition=l_ukca_ddepo3_ocean]
+compulsory=true
+description=Use a mechanistic calculation for ocean ozone deposition
+fail-if=( this == '.true.' and namelist:jules_model_environment=l_jules_parent == 0 ) ; # Deposition switch not available in JULES standalone as requires >75% open water fraction
+sort-key=5c
+type=logical
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::l_ukca_ddepo3
+
+[namelist:jules_deposition=l_ukca_dry_dep_so2wet]
+compulsory=true
+description=Accounting for surface wetness in the dry deposition for SO2
+fail-if=( this == '.true.' and namelist:jules_model_environment=l_jules_parent == 0 ) ; # Deposition switch not fully implemented in JULES standalone
+sort-key=5d
+type=logical
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::l_ukca_dry_dep_so2wet
+
+[namelist:jules_deposition=l_ukca_emsdrvn_ch4]
+compulsory=true
+description=CH4 emission driven UKCA
+sort-key=5e
+type=logical
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::l_ukca_emsdrvn_ch4
+
+[namelist:jules_deposition=ndry_dep_species]
+compulsory=true
+description=Number of species for dry deposition
+range=1:200
+sort-key=3
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::ndry_dep_species
+
+[namelist:jules_deposition=tundra_s_limit]
+compulsory=true
+description=sine of latitude of southern limit of tundra
+range=-1:1
+sort-key=7
+url=https://metoffice.github.io/jules/latest/namelists/jules_deposition.nml.html#JULES_DEPOSITION::tundra_s_limit