This directory contains the scripts used to perform the analyses presented in the ecDNA in glioblastoma (GBM) study.

The scripts are organized by figure and correspond to the analytical workflows described in the study, including single-cell ATAC-seq analysis, differential chromatin accessibility analysis, and single-cell transcription factor (TF) motif enrichment analysis, with scripts used to generate supplementary figures incorporated into the corresponding main-figure folders.

For questions or additional information, please contact Chu Pan at chu.pan@uhn.ca