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Update train_model.py #3

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Update train_model.py #3

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6 changes: 5 additions & 1 deletion predict_protein/train_model.py
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Original file line number Diff line number Diff line change
Expand Up @@ -139,7 +139,11 @@ def get_train_test(self,
# skip proteins with fewer than 20 samples
# 2021-11-12 this should be filtered at the protein step (y_df) rather than the
# transcript-protein joined set (xy_df). We will do a simple impute for the transcripts instead
if len(y_df) < params.min_proteins:

#AB 03.15.2024: we can either modify the script to import * from params script within protein_prediction or simply define it here
# Minimum number of protein observations to attempt to train mode
min_proteins = 50
if len(y_df) < min_proteins:
tqdm.tqdm.write('Not enough proteomics observations. Skipping protein.')
return None

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