Microbiome Analysis

Collection of tools to visualize microbiological abundance data in R.

Getting Started

The only setup required is to install dependencies from the renv.lock file. Instructions for how to do this can be found in the vignette.

Functions included in this project can be accessed either inside an R session, or via the command line.

Tip

Run Rscript /path/to/project/R/script_name.R --help from the command line for available arguments for each script.
Enter ?function_name the R session console for documentation on each of the available functions.

Vignette - Detailed guide on using this project.