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Focusing
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Focusing
11 followers · 12 following

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Achievement: YOLOAchievement: Pull Sharkx2Achievement: Quickdraw

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JTL-lab/README.md
github-julia
  • 🧬 Data Science Associate at the New York Genome Center (@nygenome)
  • 🎓 MSCS at Columbia University, Knowles lab (@daklab)
  • 🦠 Honours BCS at Dalhousie University, Beiko lab (@beiko-lab)
  • 🔬 Actively developing LRP2, an end-to-end long-read proteogenomics pipeline, and IsoformGazer, a webtool for visualizing alternative RNA isoforms
  • 💬 Interested in alternative splicing, RNA-binding proteins, transcriptomics, long-read analysis, proteogenomics, and all things ML
  • 🤝 Open-source contributor!
  • 🌱 Currently learning Airflow and Snowflake
  • 📝 Open to research collaborations and new opportunities!
  • 🔗 LinkedIn
  • 📫 Email: jlewandowski [at] nygenome [dot] org

Languages and Tools:

python postgresql java javascript bash scala pandas numpy matplotlib plotly scikit-learn keras tensorflow pytorch spark docker kubernetes flask linux

Julia's GitHub stats Top Languages

Julia's GitHub stats Top Languages

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  1. sheynkman-lab/LRP2 sheynkman-lab/LRP2 Public

    A Nextflow pipeline for end-to-end long-read proteogenomics analysis

    Nextflow 6

  2. daklab/IsoformGazer daklab/IsoformGazer Public

    A webtool for visualizing alternative RNA isoforms across integrated long-read RNA-seq and pseudobulked single-cell short-read RNA-seq data.

    Python 2

  3. Gene-Order-Workflow Gene-Order-Workflow Public

    A Nextflow based scientific workflow for gene order analysis of bacterial genomes.

    Python 4 1

  4. Coeus Coeus Public

    A Plotly dashboard application for easy visual exploration of gene neighborhood data.

    HTML 1

  5. AnimalDiffusion AnimalDiffusion Public

    A methodology to generate synthetic clinical animal data using generative diffusion models.

    Jupyter Notebook

  6. Halifax-Housing-Analysis Halifax-Housing-Analysis Public

    Analysis of Halifax (NS) housing trends including costs of housing vs rent, gentrification, and population density.

    HTML