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Update ECMWF Atos instructions #51

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Merged
ewhelan merged 8 commits into from
Mar 26, 2026
Merged

Update ECMWF Atos instructions #51

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6644c80
Update ECMWF Atos instructions
ewhelan Mar 26, 2026
d94d733
Add Note box for note
ewhelan Mar 26, 2026
900ced8
Remove old versions
ewhelan Mar 26, 2026
664b592
Let's be omre specific
ewhelan Mar 26, 2026
4a6163d
Fix minimum R version required
ewhelan Mar 26, 2026
9744451
Merge branch 'master' into feature/doc_correct_atos_modules
ewhelan Mar 26, 2026
f80f76f
Update Change Log
ewhelan Mar 26, 2026
9d7e74f
Correct typo
ewhelan Mar 26, 2026
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,8 @@ The format is based on [Keep a Changelog](http://keepachangelog.com)
and this project adheres to [Semantic Versioning](http://semver.org).

## [Unreleased]
### Fixed
- Correct ECMWF documentation [!49](https://github.com/Hirlam/obsmon/pull/49)
### Added
- Add GitHub Action to test installation on Ubuntu 24.04 [!48](https://github.com/Hirlam/obsmon/pull/48)
## [4.5.3] 2026-03-24
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20 changes: 12 additions & 8 deletions docs/src/Installing.md
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Expand Up @@ -4,10 +4,8 @@ Use the `install` script to install the `R` libraries needed. The main
system requirements are:

- A Linux operating system
- A working `R (>= 4.0.5)` interpreter

- A working `R (>= 4.4.0)` interpreter
- `python (>= 3.6.7)`

- Internet connection

Instructions for the various installation modes are given in
Expand Down Expand Up @@ -95,13 +93,19 @@ Follow the instructions given ini [3.1.1](@ref install-standalone).
The compilation requires the following modules to provide system dependencies:

```bash
module load R
module load gdal
module load gproj
module load geos
module purge
module load prgenv/gnu
module unload gcc
module load gcc/8.5.0
module load R/4.4.3
module load gdal/3.10.2
module load geos/3.13.1
module load proj/9.4.1
```
> [!NOTE]
> `prgenv/gnu` and `gcc/8.5.0` should be loaded by default.

Tested with current (April 2024) defaults: `R/4.2.2 geos/3.11.1 proj/9.1.1 gdal/3.6.2`.
Tested with current (April 2026) defaults: `R/4.4.3 gdal/3.10.2 geos/3.13.1 proj/9.4.1

Atos HPC currently does not provide a browser to connect to Shinny applications. However, for those using Virtual Desktop Infrastructure (VDI) provided by ECMWF, one option is to use SOCKS port forwarding from the Linux Virtual Desktop:

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