HarteminkLab
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cadmium-paper
cadmium-paper PublicScripts for processing, analyzing, and visualizing MNase-seq, RNA-seq cadmium perturbation time course
Python 2
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COMPETE
COMPETE PublicCompetitive Occupancy: Multi-factor Profile Evaluation of a Thermodynamic Ensemble
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cell-cycle-deconv
cell-cycle-deconv PublicCode to deconvolve cell cycle transcription using branching processes and CLOCCS parameters
Jupyter Notebook
Repositories
- cell-cycle-deconv Public
Code to deconvolve cell cycle transcription using branching processes and CLOCCS parameters
HarteminkLab/cell-cycle-deconv’s past year of commit activity - chromatin-transformers Public
A vision transformer model that predicts gene transcript levels from chromatin state data. By treating 2D MNase-seq data as images, the model learns local regulatory features that drive transcript levels in an empirical, data-driven manner.
HarteminkLab/chromatin-transformers’s past year of commit activity - RoboCOP Public
HarteminkLab/RoboCOP’s past year of commit activity - Moyung_2025_YeastDeletion Public
Code repository to analyze MNase-seq data from Moyung et al. (2025).
HarteminkLab/Moyung_2025_YeastDeletion’s past year of commit activity - cadmium-paper Public
Scripts for processing, analyzing, and visualizing MNase-seq, RNA-seq cadmium perturbation time course
HarteminkLab/cadmium-paper’s past year of commit activity
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