Add genome-alignment and RNA004 support (xPore v2.2) - #238

Merged

ClareRobin merged 8 commits into

GoekeLab:masterfrom

ClareRobin:clare_dev_pr

Jul 17, 2026

Commits on Jun 25, 2026

Add --kmer_source flag for genome-alignment compatibility
ClareRobin
committed
f793462
Updates to readcount max for genome alignment compatibility:
ClareRobin
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6fb51f8
Add RNA004 5-mer model as default diffmod prior; renamed RNA002 model (so it's clear it's the RNA002 model):
ClareRobin
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0db7a5f
Update Docs: document genome-alignment and RNA004 support
ClareRobin
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eade893
Minor fixes to readME release history and quickstart demo data
ClareRobin
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eceba77
Fix kmer_col possibly-unbound NameError in parallel_preprocess_gene/_tx
ClareRobin
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252b263

Commits on Jul 9, 2026

fix: preprocess_tx docstring
ClareRobin
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89709eb
add pytest suite + CI
ClareRobin
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d2d2b41