I realise this is a bit beyond scope for proActiv but it would be helpful to have an example on how to generate a valid junction file from raw reads (using STAR or Tophat2/HISAT2 for instance) for completeness.
Would prevent people like me who now find themselves a bit lost in the docs for these aligners and wondering which options are needed and which are optional.
I realise this is a bit beyond scope for
proActivbut it would be helpful to have an example on how to generate a valid junction file from raw reads (using STAR or Tophat2/HISAT2 for instance) for completeness.Would prevent people like me who now find themselves a bit lost in the docs for these aligners and wondering which options are needed and which are optional.