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Subduction phase-change rule engine (phase_change_option 3) on a VirtualTopology marker grid - #110

Merged

chaseshyu merged 32 commits into

masterfrom

feature/virtual-topology

Oct 30, 2026

Merged

Subduction phase-change rule engine (phase_change_option 3) on a VirtualTopology marker grid#110
chaseshyu merged 32 commits into
masterfrom
feature/virtual-topology

Commits on Oct 25, 2026
- fix: an unimplemented phase_change_option dies at input, not mid-run
  
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- fix: phase_change_option 1 runs without hydration processes
  
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- fix: no field averaging over a one-step window
  
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- fix: averaged output fields divide by the steps of their window
  
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- fix: rebuild the lumped masses after phase changes convert markers
  
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- fix: compare.py's Marker Z is the vertical coordinate in 3D
  
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- refactor: rename mattype_crust and mattype_sed to their full names
  
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- feat: SurfaceTopo::build can skip the attenuation table
  
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- feat: VirtualTopology marker-cell index with a checkpoint round trip
  
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- feat: subduction phase-change rule engine, phase_change_option 3
  
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- docs: a subduction example for phase_change_option 3
  
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- perf: option-3 markers take their grid coordinate from get_ZPT
  
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- perf: option-3 pass 1 skips materials with no rule before get_ZPT
  
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- perf: phase_change_option 3 pass 2 walks the grid before get_ZPT
  
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- perf: phase_change_option 3 pass 2 reads a per-cell crust-below map
  
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- refactor: VirtualTopology takes no lock; drops move between the passes
  
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- perf: phase_change_option 3 runs its marker passes on the GPU
  
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Commits on Oct 27, 2026
- refactor: call the serpentinization grid's crust set "wet crust"
  
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- fix: decay surface plastic strain in every top element
  
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- refactor: drop the mid-ocean-ridge eruption's leftover surface fields
  
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  b247e01
- fix: an unset or shared material index no longer turns a phase rule off
  
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  722b0e3
- fix: a restart rebuilds the serpentinization grid at the cfg's cell size
  
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- fix: rebuild the serpentinization grid at each quality check
  
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- refactor: store the serpentinization grid's buckets in one array
  
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- fix: end the serpentinization grid below the deepest mantle it can serpentinize
  
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- refactor: fill the grid's buckets without a per-cell temporary
  
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- refactor: convert phases before update_mesh() instead of rebuilding the masses after
  
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- fix: lift the nodes above a snapped bottom node when MMG returns a folded mesh
  
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Commits on Oct 30, 2026
- feat: choose the pressure the phase_change_option 3 rules read
  
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- feat: make the serpentinization depth cap and wet-crust fraction keys
  
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- docs: record this branch under Unreleased
  
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- Merge branch 'master' into feature/virtual-topology
  tan2
  authored
  925ba1d

Commits

Commits on Oct 25, 2026

Commits on Oct 27, 2026

Commits on Oct 30, 2026