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1. alzheimers-scrna-analysis alzheimers-scrna-analysis Public

   Single-cell transcriptomic analysis of Alzheimer's disease using Scanpy - cell-type-specific gene expression in the human prefrontal cortex

   Jupyter Notebook

2. Hannah_Agentic_AI Hannah_Agentic_AI Public

   Real-time voice AI research assistant for biotech, pharma, and life sciences news and updates

   Python

3. nsclc-tumour-microenvironment nsclc-tumour-microenvironment Public

   Single-cell RNA-seq analysis of the NSCLC tumour microenvironment - T cell exhaustion trajectories and macrophage polarisation in lung adenocarcinoma

   Jupyter Notebook

4. ibd-harmony-integration ibd-harmony-integration Public

   Multi-sample scRNA-seq integration using Harmony across 18 IBD donors - batch correction, cellular composition analysis, and myeloid activation signatures in Crohn's disease vs ulcerative colitis v…

   Jupyter Notebook

5. amp-colabfold amp-colabfold Public

   Antimicrobial peptide screening pipeline: DRAMP curation, physicochemical feature modelling, gradient boosting + SHAP, ColabFold structure prediction

   Jupyter Notebook

6. proteinmpnn-cel5a proteinmpnn-cel5a Public

   Thermostable endoglucanase redesign via ProteinMPNN inverse folding - fixed catalytic constraints, AlphaFold2 validation, 20/20 designs beat wildtype pLDDT

   Jupyter Notebook