Emad-COMBINE-lab

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1. GRouNdGAN GRouNdGAN Public

   A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬

   Python 40 5

2. MARSY MARSY Public

   Code for the MARSY model with sample input and response. I included figures to show the architecture and format of input samples.

   Python 15 1

3. pllm-ppi-data-leakage pllm-ppi-data-leakage Public

   Code and Data for "A flaw in using pre-trained pLLMs in protein-protein interaction inference models"

   Python 11 2

4. clasp clasp Public

   Tri-modal contrastive learning framework for aligning protein structure, sequence, and description representations

   Python 4 1

5. CellPace-release CellPace-release Public

   CellPace: A temporal diffusion-forcing framework for simulation, interpolation and extrapolation of single-cell dynamics

   Python 4 1

6. InterpretableAI_for_DRP InterpretableAI_for_DRP Public

   Code to run interpretable pathway-based models

   Python 1