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BioModels on Jummp

BioModels is being upgraded to a new infrastructure based on Jummp. It's been reused advanced features developed in Jummp like fully versioned storage engine with fine grained access right settings and supports multiple modelling formats.

Improvements and New Features

  • Improve streamlined submission process.
  • Improve model display.
  • Model can be downloaded as a COMBINE Archive.
  • Support submission in multiple formats.
  • Support for collaborative curation -- updates, sharing of private models, publishing, notifications and team working.
  • Implement faceted search -- search results can be progressively filtered by curation status, model format, modelling approaches, disease, keywords, cross references (UniProt, ChEBI, Ensembl, etc.)
  • Search results can be sorted by name, authors, publication year and they are downloadable as an archive.

User manuals

Supported by a contextual sensitive help system, users are able to jummp to the right assistance when trying to operate a specific function. This help system tries to locate you at the documentation page corresponding to the functionality you are discovering. To get the full online documentation, please take a look at
https://bitbucket.org/jummp/jummp/wiki/manuals

Install

See https://bitbucket.org/jummp/jummp/wiki/install

Development

See https://bitbucket.org/jummp/jummp/wiki/dev

Developers

Contact

Email: biomodels-developers@lists.sf.net

Licensing

BioModels source code is distributed under the GNU Affero General Public License. Please read license.txt for information on the software availability and distribution.

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