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Denolle Lab — Skill Files

A shared, living collection of skill specifications for the Denolle Lab at the University of Washington. We do seismology, geophysics, and AI-driven hazard science — and we use AI tools daily. This repo captures how we work, so that knowledge is discussable, transferable, and improvable.

What is a skill file?

A skill file is a structured document that makes domain knowledge explicit. Two types live here:

Type Format Purpose
AI skill TEMPLATE-ai-skill.md Configure a Copilot/LLM agent for a specific lab task — knowledge anchor, standing instructions, prompt intent
Research method TEMPLATE-method.md Document a research workflow, protocol, or technique so it can be learned, reused, and critiqued

Both types are designed to be discussable. Use GitHub Discussions to propose changes, ask questions, or share what worked.

Caution Note: None of these skill files has been rigorously evaluated.

Directory structure

ai-tools/          AI/Copilot skill files for lab-specific tasks
research-methods/  Seismology and geophysics method docs
data-analysis/     Python workflows and data processing guides
writing/           Paper, grant, and scientific communication guides

How to use a skill file

AI skills — load the file as a Copilot agent instruction or paste the standing instructions block into your preferred LLM. Upload the listed knowledge anchor document types before prompting.

Research methods — read as a protocol. Follow the workflow steps, adapt to your dataset, and note any deviations in your lab notebook.

How to contribute

See CONTRIBUTING.md for the full guide. Short version:

  1. Open a new-skill issue or improve-skill issue to start the conversation
  2. Fork → branch (skill/short-name) → PR
  3. Follow the appropriate template — one of TEMPLATE-ai-skill.md or TEMPLATE-method.md
  4. Include at least one honest failure mode before submitting

Related resources

License

MIT — use, adapt, and share freely with attribution.

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Domain-specific skill files for the Denolle Lab — research methods, AI tools, data analysis, and writing guides

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