Hello vissE team,
Very nice tool, congrats!
Is it possible to scale the width of the edges in plotMsigNetwork by the weight of the gene set overlap from computeMsigOverlap?
Something with ggraph::geom_edge_link(edge_width = 0.2 * edgeSF,... ?
gs_ovlap = computeMsigOverlap(gsc, thresh = 0.5)
gs_ovnet = computeMsigNetwork(gs_ovlap2, gsc)
plotMsigNetwork(gs_ovnet)
Hello vissE team,
Very nice tool, congrats!
Is it possible to scale the width of the edges in
plotMsigNetworkby the weight of the gene set overlap fromcomputeMsigOverlap?Something with
ggraph::geom_edge_link(edge_width = 0.2 * edgeSF,...?gs_ovlap = computeMsigOverlap(gsc, thresh = 0.5)gs_ovnet = computeMsigNetwork(gs_ovlap2, gsc)plotMsigNetwork(gs_ovnet)