Feat/standardize benchmarks#29

Open

miagarvey wants to merge 7 commits into

mainfrom

feat/standardize-benchmarks

Commits on Nov 6, 2025

add study parameters benchmark with variant ann ID alignment
miagarvey
committed

Commits on Nov 13, 2025

Standardize FA, Drug, and Study Parameters benchmarks
miagarvey
committed
feat: standardize fa, drug, study params benchmarks
miagarvey
committed
feat: Standardize pheno benchmark to match FA/Drug/StudyParams: detailed results dict, 0-1 scale, shared_utils evaluators, configurable field_weights, direct ground truth parameter
miagarvey
committed

Commits on Nov 17, 2025

adding benchmark comparison script
miagarvey
committed

Commits on Nov 20, 2025

updated alignment system to best match rather than using variant IDs
miagarvey
committed

Commits on Nov 24, 2025

displays detailed results with error explanations, added benchmark analysis summary of first 5 articles, fully removed variant id and study params id from study params score, modified pheno alignment
miagarvey
committed