feat: scaffold for all annotations with reasonable structure#13

Merged

shloknatarajan merged 47 commits into

DaneshjouLab:mainfrom

shloknatarajan:main

Jul 1, 2025

Commits on Jun 28, 2025

feat: efficiency improvements - cache JSON loading and fix type annotations

devin-ai-integration[bot]
and
shloknatarajan
committed
Add linux-64 platform support for Devin setup
shloknatarajan
committed
Add drug annotation extraction component

devin-ai-integration[bot]
and
shloknatarajan
committed
Update drug annotation extraction to process variants individually

devin-ai-integration[bot]
and
shloknatarajan
committed
Merge pull request #2 from shloknatarajan/devin/1751131840-drug-annotation-extraction
shloknatarajan
authored
Merge branch 'main' into devin/1751130154-efficiency-improvements
shloknatarajan
authored
Merge pull request #1 from shloknatarajan/devin/1751130154-efficiency-improvements
shloknatarajan
authored
feat: gdown data downloading
shloknatarajan
committed
feat: gdown pixi command
shloknatarajan
committed
fix: updated command
shloknatarajan
committed
feat: envrc gitignore
shloknatarajan
committed
fix: remove zip after unzipping
shloknatarajan
committed
chore: black formatting
shloknatarajan
committed
feat: implement phenotype and functional annotation extraction components

devin-ai-integration[bot]
and
shloknatarajan
committed
test: move test files to tests/ folder for better organization

devin-ai-integration[bot]
and
shloknatarajan
committed
fix: update import paths for tests moved to tests/ folder

devin-ai-integration[bot]
and
shloknatarajan
committed
Merge pull request #3 from shloknatarajan/devin/1751134713-phenotype-functional-extraction
shloknatarajan
authored

Commits on Jun 29, 2025

feat: moves tests into folder
shloknatarajan
committed

Commits on Jun 30, 2025

Commits on Jul 1, 2025