Skip to content

make temp dir more robust#350

Open
y9c wants to merge 3 commits intoDaehwanKimLab:masterfrom
y9c:master
Open

make temp dir more robust#350
y9c wants to merge 3 commits intoDaehwanKimLab:masterfrom
y9c:master

Conversation

@y9c
Copy link

@y9c y9c commented Feb 14, 2022

No description provided.

@cschu
Copy link

cschu commented Apr 26, 2024

Could we have that, please? With the temp dir being confined to "/tmp", HISAT2 is unusable in certain multiuser HPC environments with limited resources for node-specific /tmp-dirs.

@mourisl
Copy link
Collaborator

mourisl commented Sep 9, 2025

We recently made the "--temp-directory" option work (#442 ), would that resolve your issue too? Using "/tmp" would still be easier for documentation.

@cschu
Copy link

cschu commented Sep 9, 2025

Yea, that's even better. Thanks!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants