Overwrite Arghavan's branch with main

.github/ISSUE_TEMPLATE/new_ontology.yml

@@ -8,18 +8,18 @@ title: "Ontology submission: ${{ github.event.issue.number }}"
 
 body:
   - type: input
-    id: name
+    id: title
     attributes:
-      label: Name
-      description: Name of the ontology
+      label: Title
+      description: Title/Name of the ontology
       placeholder: e.g. Modelling and Standards Ontology
 
   - type: input
-    id: acronym
+    id: prefix
     attributes:
-      label: Acronym
-      description: Namespace acronym
-      placeholder: e.g. MNS
+      label: Prefix
+      description: Namespace prefix
+      placeholder: e.g. bot, saref4bldg
 
   - type: input
     id: version
@@ -29,50 +29,50 @@ body:
       placeholder: e.g. 0.0.v
 
   - type: input
-    id: year
+    id: created
     attributes:
-      label: Year published
+      label: Created
       description: Year that version was created
       placeholder: e.g. 2024
 
   - type: textarea
-    id: short_description
+    id: description
     attributes:
-      label: Short Description
+      label: Description
       description: Brief summary of the ontology
       placeholder: e.g. This ontology supports topic/use-case X and serves stakeholder Y, which is useful because Z.
 
   - type: input
     id: uri
     attributes:
-      label: URI/Namespace
-      placeholder: https://z-arghavan.github.io/MnSOntology/
+      label: URI
+      placeholder: https://w3id.org/MnSOntology#
 
 
   - type: input
     id: reference
     attributes:
       label: Reference
-      description: Web page or DOI that documents the ontology
-      placeholder: e.g. https://ec-3.org/#
+      description: Web page or DOI of publication that documents the ontology
+      placeholder: e.g. https://doi.org/##
 
   - type: input
     id: linked_aec
     attributes:
       label: Linked-to ontologies AECO
-      description: Acronyms of AECO ontologies; use semicolons to separate multiple values
+      description: Prefixes of AECO ontologies that the ontology links to. Look-up existing prefixes in BE-OLS. Use semicolons to separate multiple values
       placeholder: bot; ifc
 
   - type: input
-    id: link_to_upper
+    id: linked_upper
     attributes:
       label: Linked-to ontologies UPPER
-      description: Acronyms such as schema, skos, prov, etc.; use semicolons to separate
+      description: Prefixes of upper ontologies that the ontology links to. For example, schema, skos, prov, dcterms, foaf, etc.; use semicolons to separate
       placeholder: schema; skos
 
   - type: input
     id: linked_other
     attributes:
-      label: Linked other professional domain ontologies
-      description: Ontologies outside AECO (e.g. eli); use semicolons to separate
+      label: Linked-to ontologies OTHER
+      description: Prefixes of ontologies outside AECO that the ontology links to. For example, eli. Use semicolons to separate
       placeholder: eli

.github/workflows/collect_submissions.yml

@@ -1,4 +1,4 @@
-name: Collect Ontology Submissions
+name: Ontology Submission
 
 on:
   issues:
@@ -21,16 +21,16 @@ jobs:
 
             // Map headings exactly to your desired column titles
             const headingMap = {
-              'Name': 'Name',
-              'Acronym': 'Acronym',
+              'Title': 'Title',
+              'Prefix': 'Prefix',
               'Version': 'Version',
-              'Year published': 'Year published',
-              'Short Description': 'Short Description',
-              'URI/Namespace': 'URI/Namespace',
+              'Created': 'Created',
+              'Description': 'Description',
+              'URI': 'uri',
               'Reference': 'Reference',
               'Linked-to ontologies AECO': 'Linked-to ontologies AECO',
               'Linked-to ontologies UPPER': 'Linked-to ontologies UPPER',
-              'Linked other professional domain ontologies': 'Linked other professional domain ontologies'
+              'Linked-to ontologies OTHER': 'Linked-to ontologies OTHER DOMAINS'
             };
 
             const lines = issue.body.split(/\r?\n/);

.github/workflows/convert_excel_to_json.yml

@@ -3,16 +3,26 @@ name: Convert Excel to JSON
 on:
   push:
     paths:
-      - 'data/*.xlsx'
+      - 'data/Ontologies_forRepo.xlsx'
+      - 'excel_to_json.py'
+      - '.github/workflows/*.yml'
   workflow_dispatch:
 
+permissions:
+  contents: write
+
+concurrency:
+  group: json-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   convert:
     runs-on: ubuntu-latest
-
     steps:
       - name: Check out repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
 
       - name: Set up Python
         uses: actions/setup-python@v4
@@ -25,25 +35,28 @@ jobs:
           pip install -r requirements.txt
 
       - name: Set timestamp
-        run: echo "TS=$(date -u +'%Y%m%dT%H%M%SZ')" >> $GITHUB_ENV
+        run: echo "TS=$(date -u +'%Y%m%dT%H%M%SZ')" >> "$GITHUB_ENV"
 
-      - name: Convert Excel to JSON (live + backup)
+      - name: Convert Excel to JSON
+        env:
+          IN: data/Ontologies_forRepo.xlsx
+          OUT_LIVE: data/Ontologies_forRepo.json
         run: |
           mkdir -p output
-          for file in data/*.xlsx; do
-            name=$(basename "$file" .xlsx)
-            # overwrite the live JSON for your front-end
-            python excel_to_json.py "$file" "data/${name}.json"
-            # write a timestamped backup
-            python excel_to_json.py "$file" "output/${name}_${TS}.json"
-          done
-
-      - name: Commit and push JSON
+          python excel_to_json.py --input "$IN" --output "$OUT_LIVE" --sheet Data
+          python excel_to_json.py --input "$IN" --output "output/Ontologies_forRepo_${TS}.json" --sheet Data
+
+      - name: Commit and push JSON safely
+        env:
+          BRANCH_NAME: ${{ github.ref_name }}
         run: |
-          git config user.name "github-actions[bot]"
+          git config user.name  "github-actions[bot]"
           git config user.email "github-actions[bot]@users.noreply.github.com"
-          git add data/*.json output/*.json
-          if ! git diff --quiet --cached; then
-            git commit -m "Auto-convert Excel to JSON"
-            git push
+          git add data/Ontologies_forRepo.json output/Ontologies_forRepo_*.json || true
+          if git diff --quiet --cached; then
+            echo "No changes to commit."
+            exit 0
           fi
+          git commit -m "Auto convert Excel to JSON"
+          git pull --rebase origin "$BRANCH_NAME"
+          git push origin HEAD:"$BRANCH_NAME"

.github/workflows/weekly-ontology-scan.yml

@@ -0,0 +1,43 @@
+name: Weekly ontology scan
+
+on:
+  schedule:
+    # Every Friday at 23:00 UTC
+    - cron: "00 00 * * 6"
+  workflow_dispatch: {}
+
+permissions:
+  contents: write
+
+jobs:
+  scan:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install dependencies
+        run: |
+          python scripts/find_new_ontologies.py
+
+      - name: Run scan
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          LOOKBACK_DAYS: "7"
+          STATE_PATH: "data/state.json"
+          OUTPUT_PATH: "data/latest.md"
+        run: |
+          python scripts/find_new_ontologies.py
+
+      - name: Commit report and state
+        run: |
+          git config user.name "github-actions"
+          git config user.email "github-actions@users.noreply.github.com"
+          git add data/state.json data/latest.md
+          git diff --staged --quiet || git commit -m "Weekly ontology scan update"
+          git push

.gitignore

@@ -0,0 +1,2 @@
+*.DS_Store
+node_modules/

LICENSES/Apache-2.0

@@ -0,0 +1,63 @@
+
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