This is a repository for the scripts and workflows used to analyze FL SCTLD RNA sequencing data

Within this repository you can find:

  1. qc_pipe.nf -> the quality control pipeline written as a Nextflow script
  2. qc_pipe.config -> the quality control configuration file containing all the parameters used for the commands in the pipeline
  3. flsctld_QC.yml -> a yaml file that can be used to create a conda environment containing the programs used in the quality control pipeline
  4. SPRING_2022 -> Code used to asses RNA sequencing data and Symbiodiniaceae ITS2 data in Spring 2022