v3.1.0-beta1

What's Changed

• Migrate Mascot to BEAST3: Maven, JPMS, spec types by @alexeid in #17
• Bump beast.version to 2.8.0-beta5 and surefire to 3.5.2 by @alexeid in #20
• Fix Covariate constructor and GLM intervalNr calculation by @alexeid in #15
• ci: clean-deploy on tag and skip redundant verify by @alexeid in #21
• Bump project version to 3.1.0-beta1 by @alexeid in #22
• Update repo URLs and Nicola's name spelling by @alexeid in #23
• Update in-code citations and README by @alexeid in #24

New Contributors

• @alexeid made their first contribution in #17

Full Changelog: v3.0.8...v3.1.0-beta1

Larger than prior added

v3.0.8

version update

Bug Fix in the tree mapping part of MASCOT

The way intermediate node states (and times) for the mapped mascot tree were computed caused issues due to tiny discrepancies in the results of additional and subtraction of floats that made the way intermediate results were retrieved problematic. This release changes how intermediate results of node states are retrieved to solved that issue

MASCOT-Skyline version including BEAUTi interface

v3.0.6

Merge remote-tracking branch 'origin/master'

Skyline migration implementation

Adds class to do skyline on migration events + add loggers for lhm

Fixes rate shift error

Rate shifts weren't properly updated when they are relative to the tree height

Joint, block operator updates

v3.0.3

updates version xml

sequence mapper update

v3.0.2

version 3.0.2 update

Mascot skyline implementation

v3.0.1

version file update to 3.1.0

Mascot port to beast v.27

v3.0.0

delete templates