coTE_paper

• This repository contains the downstream processing and analysis scripts used in the manuscript (https://pmc.ncbi.nlm.nih.gov/articles/PMC11326257/). You can easily regenerate the figures using the code and datasets - provided here.

• Datasets for the code are available at: https://zenodo.org/records/15337774

• Alternatively, you can generate these datasets from scratch using our supplementary tables.

Other codes for the paper

You can find the code for neighbor voting, TE modeling, and the winsorization deduplication method in another repository: https://github.com/CenikLab/TE_model

Interested in RiboBase?

Here is the repo for reference files: https://github.com/RiboBase/

But if you want full access to RiboBase, please email: ccenik@austin.utexas.edu