Issues

• Update ENSEMBL containerized VEP interface code to handle much longer consequences

  CapraLab/pdbmap#52 · Filter by author ChrisMoth opened on Mar 30, 2025

• Improve shrouding of sensitive data during log creation

  CapraLab/pdbmap#51 · Filter by author ChrisMoth opened on Mar 30, 2025

• Add MANE cross-references

  CapraLab/pdbmap#48 · Filter by author ChrisMoth opened on Mar 13, 2024
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• Cross reference uniprot IDs to ALL Sifts-aligned PDBs, not just PDB IDs from idmapping

  CapraLab/pdbmap#46 · Filter by author ChrisMoth opened on Feb 13, 2023

• Replace sys.exit() across all modules

  CapraLab/pdbmap#44 · Filter by author ChrisMoth opened on Oct 3, 2022

• With PFAM server going away, create domain graphics locally

  CapraLab/pdbmap#42 · Filter by author ChrisMoth opened on Sep 14, 2022

• Integrate new Gnomad Mitochondrial data

  CapraLab/pdbmap#39 · Filter by author ChrisMoth opened on Jul 15, 2022

• Gnomad Variants: Identify and reject transcripts which don't map to Chrom1-22/X/Y/MT

  CapraLab/pdbmap#32 · Filter by author ChrisMoth opened on Nov 22, 2021

• Style Code to match PEP 8

  CapraLab/pdbmap#31 · Filter by author ChrisMoth opened on Nov 22, 2021

• Document pdbmap.py --load_vcf; comment .slurm scripts

  CapraLab/pdbmap#25 · Filter by author ChrisMoth opened on Jul 14, 2021

• Add access to gene ID numbers from uniprot idmapping

  CapraLab/pdbmap#22 · Filter by author ChrisMoth opened on Mar 5, 2021

• Create biounits from mmCIF files, in biopython.

  CapraLab/pdbmap#16 · Filter by author ChrisMoth opened on May 12, 2020

• Create tests to validate pdbmap installation, enviornment, and basic return values.

  CapraLab/pdbmap#12 · Filter by author ChrisMoth opened on Oct 28, 2019