additional tweaks after migration

.github/workflows/build.yaml

@@ -54,6 +54,7 @@ jobs:
         id: build
         uses: docker/build-push-action@v6.18.0
         with:
+          file: ./docker/Dockerfile
           platforms: ${{ matrix.platform }}
           labels: ${{ steps.meta.outputs.labels }}
           tags: ghcr.io/${{ vars.ORG_REPO }}/${{ github.event.repository.name }}

Dockerfile → docker/Dockerfile

@@ -1,6 +1,6 @@
 # Start with BioSim base image.
 ARG BASE_IMAGE=latest
-FROM ghcr.io/jimboid/biosim-jupyterhub-base:$BASE_IMAGE
+FROM ghcr.io/ccpbiosim/jupyterhub-base:$BASE_IMAGE
 
 LABEL maintainer="James Gebbie-Rayet <james.gebbie@stfc.ac.uk>"
 LABEL org.opencontainers.image.source=https://github.com/jimboid/biosim-structure-validation-workshop
@@ -14,19 +14,14 @@ WORKDIR $HOME
 # Install workshop deps
 RUN pip install requests
 
-COPY --chown=1000:100 exercise1.ipynb /home/jovyan
-COPY --chown=1000:100 exercise2.ipynb /home/jovyan
-
-COPY --chown=1000:100 coot_dens.png /home/jovyan
-COPY --chown=1000:100 errb4_validation_report.png /home/jovyan
-COPY --chown=1000:100 pdbekb_structures.png /home/jovyan
-COPY --chown=1000:100 RNApol_in_uglymol.png /home/jovyan
+COPY --chown=1000:100 . .
+RUN rm -rf LICENSE README.md docker .git .github
 
 # Copy lab workspace
-COPY --chown=1000:100 default-37a8.jupyterlab-workspace /home/jovyan/.jupyter/lab/workspaces/default-37a8.jupyterlab-workspace
+COPY --chown=1000:100 docker/default-37a8.jupyterlab-workspace /home/jovyan/.jupyter/lab/workspaces/default-37a8.jupyterlab-workspace
 
 # UNCOMMENT THIS LINE FOR REMOTE DEPLOYMENT
-COPY jupyter_notebook_config.py /etc/jupyter/
+COPY docker/jupyter_notebook_config.py /etc/jupyter/
 
 # Always finish with non-root user as a precaution.
 USER $NB_USER