Repository navigation
Conversation
for more information, see https://pre-commit.ci
# Conflicts: # CHANGELOG.md
4 tasks done
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Changes
This PR adds a SLURM status hook for classic Snakemake cluster mode and wires
--cluster-status/--cluster-cancelinto ASPEN so cancelled, timed out, OOM-killed, or otherwise failed child jobs are detected and handled cleanly instead of leaving the master workflow hanging. It also adds a small runtime guard for the status script and updates the changelog.Fixes #141.
Issues
PR Checklist
- [ ] Update docs if there are any API changes.CHANGELOG.mdwith a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/