Repository navigation
Conversation
Explain where motif enrichment outputs live, how HOMER and AME are run together, and how junior users should interpret the key result files. _commit message is ai-generated_
Add the development-version changelog entry for the motif enrichment documentation work in PR #146. _commit message is ai-generated_
for more information, see https://pre-commit.ci
4 tasks done
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Changes
results/peaks/.../*_motif_enrichment/, not as QC outputs.target.faandbackground.faare reused by AME, how ASPEN parallelizes AME for speed, and how to interpretknownResults.txtandame_results.txt.Issues
Fixes #129
PR Checklist
(
Strikethroughany points that are not applicable.)CHANGELOG.mdwith a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/- [ ] Test run completes successfully on biowulf.Generated using AI