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… to enable more sampling options
…nce method for trigger decoding
…an evaluator for Switch data
… file. Added script for generating marker data and documented its usage.
Simulator multimodal
* add script for simulating lm change with different phrases, small updates * add processing script, add NullDAQ * Update to custom typing parameters TODO: finish processing script, integrate LLM * Add progress bar and WIP update to average phrases across LM * update the process script to the new output format * Add final phrases * add plotting and stats to the processing script * add missing params command * add more logging and custom metrics * Integration of causal model, add phrases, update processing scripts * matrix processing * update figure * move script to a group demo * reset devices default * remove retry logic from language model init * reset static defaults * update parameters * remove bad test * lint * remove integration tests (for now) and add some info to sim README + linting * drop support for 3.8 * Added textpredict dependency, removed LM dependencies that are included in that package now * Refactored main language model classes into adapters that use the new textpredict package * Renamed ngram model * Updated imports * More ngram renaming * More ngram renaming, adjusted mixture default params * Updated textpredict version * Converted mixture model to adapter * Conveted oracle model into adapter * Deprecated InvalidLanguageModelException from bcipy in favor of aactextpredict's exception * Upgraded transformers version to address pytorch deprecation warnings * Adjusted max bump to 1, all mass on target * Updated test cases to use adapters * Store bcipy symbol set alongside toolkit model symbol set * Updated demos to use new adapter classes * Updated test class names * Fixed LM class references * Updated LM documentation * Fixed misc LM class references * Updated LM class references * lint * Update textpredict dependency to fix 3.10 * Converted LanguageModelAdapter base class to BciPyLanguageModel protocol. Adjusted subclasses and references * Restored BciPy's own uniform model * Renamed base LM class back to LanguageModel * Removed language module exclusion from mypy * Deprecated response type, added separate protocols for char and word LMs * Updated dependency to the new toolkit name * Loosened textslinger dependency to allow minor changes without updating requirement every time * Refactored Language Model protocols; fixed linting issues and import sort order. --------- Co-authored-by: Tab Memmott <tab.memmott@gmail.com> Co-authored-by: lawhead <lawhead@ohsu.edu>
Organized imports across the code base
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celikbasak
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Aug 24, 2025
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Huge release! Thank you Tab!!
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Overview
The official release of BciPy version 2.0 is here!
Major Changes
The 2.0 release will be the first non-release candidate to merge with the main branch. This is what has changed since the last release candidate.
convertmodule. Seedemo_convert.pyBIDS export and refactor modules #362 Add support for 1020 channels and eye tracker data BIDS DSI-24, ET Data, and 1020 support #369helpersintoioandcoreBIDS export and refactor modules #362pyproject.tomlfor installs Update to use pyproject.toml #367seabornBIDS export and refactor modules #362mne-bidsBIDS export and refactor modules #362pybvBIDS export and refactor modules #362EDFlib-PythonBIDS export and refactor modules #362pyedflibBIDS export and refactor modules #362Note: All other functionality described in rc1-4 is also included here for the major release.
Testing
make test-allDocumentation
This release features significant documentation improvements in both top-level READMEs and docstrings. While the coverage is not 100%, most major functionality is covered by unit tests, linting, and typing.