Changes package name to Diffid - #13
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BradyPlanden
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* feat: initial documentation with mkdocs Adds the following pages: - Getting started: installation, quickstart, first ODE fit, core concepts - Tutorials w/ notebooks - User guides for optimiser selection, calibration, parallelisation - Optimiser and samplers algorithms - Auto-generated from stubs for Python + Rust links - Visual gallery of example applications - Contributing guidelines, architecture, building instructions * fix: refactor utils.py into bindings plotting module, add `problem.initial_values` to bindings, * docs: fixes for tutorial notebooks * refactor: ScalarProblemBuilder.with_callable renamed .with_objective, optimizer -> optimiser * feat: adds acceptance_ratio to Samples struct, SamplerResults bindings return NDArray type, adds aggregated samples method, stubgen fixes * feat: population-based optimisers & sampler support parallel capable objectives via enum based polymorphism Problem.optimise & Problem.sample default to batch based evaluation, automating parallelisation when selected. Gracefully fallback to sequential otherwise. * chore: increment diffsol/diffsl dependency * docs: general cleanup, adds architecture diagram, updates to tutorials * restores optimiser and sampler docs * Changes package name to `Diffid` (#13) * feat: renames package to 'Diffid' * fix: CI packaging, missing diagram file * fix: move diagram assets to docs/assets folder * fix: add PR write permissions to docs-checks workflow * infra: removes scheduled docs workflow * docs: group dependency in CI, simplify notebook/docs testing suite * docs: updates stale 'planned' information, optimiser guidance * docs: optimizer -> optimiser * docs: remove tutorial numbering * docs: case-sensitive fixes * docs: adds architecture diagram to readme * docs: updates architecture, removes dark background * docs: cleanup and simplify * docs: updates README
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