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Restored bokeh plotting functionality with Docker build #81

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Restored bokeh plotting functionality with Docker build #81

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5970412
Restored bokeh functionality with Docker build
jdimatteo Oct 8, 2021
6a78c92
clean up permissions
jdimatteo Oct 8, 2021
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11 changes: 7 additions & 4 deletions bamliquidator_internal/Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -11,10 +11,12 @@ RUN make -j6

FROM ubuntu:bionic as runner

RUN apt-get -y update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends python3 \
python3-tables python3-scipy \
RUN apt-get -y update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends python \
python-setuptools python-pip python-tables python-scipy \
&& rm -rf /var/lib/apt/lists/*

RUN pip install bokeh==0.9.3 "openpyxl>=1.6.1,<2.0.0"

WORKDIR /opt/liquidator
COPY --from=builder /usr/lib/x86_64-linux-gnu/libtcmalloc_minimal.so.4 \
/usr/lib/x86_64-linux-gnu/libtbb.so.2 \
Expand Down Expand Up @@ -55,9 +57,10 @@ COPY --from=builder /opt/liquidator/bamliquidatorbatch /opt/liquidator/bamliquid

ENV PATH="$PATH:/opt/liquidator"

RUN python3 bamliquidatorbatch/test.py
RUN python bamliquidatorbatch/test.py
RUN chmod +rx /opt/liquidator/bamliquidatorbatch/*.py

ARG GIT_COMMIT
LABEL git_commit=$GIT_COMMIT

ENTRYPOINT ["/usr/bin/python3","/opt/liquidator/bamliquidatorbatch/bamliquidator_batch.py"]
ENTRYPOINT ["/usr/bin/python","/opt/liquidator/bamliquidatorbatch/bamliquidator_batch.py"]
2 changes: 1 addition & 1 deletion bamliquidator_internal/bamliquidatorbatch/bamliquidator_batch.py
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Expand Up @@ -19,7 +19,7 @@
from os.path import basename
from os.path import dirname

__version__ = '1.5.1'
__version__ = '1.5.3'

default_black_list = ["chrUn", "_random", "Zv9_", "_hap"]

Expand Down