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Fix off-by-one error in structure-track indexing in the GFP design notebook. #356

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scandido merged 1 commit into from
Jul 1, 2026
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Fix off-by-one error in structure-track indexing in the GFP design notebook. #356

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6 changes: 3 additions & 3 deletions cookbook/tutorials/gfp_design.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -212,9 +212,9 @@
"prompt.structure[-1] = 4097\n",
"# ... and then we fill in structure tokens at key residues near the alpha helix\n",
"# kink and at the stabilizing R and E positions on the beta barrel.\n",
"prompt.structure[55:70] = template_gfp_tokens.structure[56:71]\n",
"prompt.structure[93] = template_gfp_tokens.structure[93]\n",
"prompt.structure[219] = template_gfp_tokens.structure[219]\n",
"prompt.structure[55 + 1 : 70 + 1] = template_gfp_tokens.structure[55 + 1 : 70 + 1]\n",
"prompt.structure[93 + 1] = template_gfp_tokens.structure[93 + 1]\n",
"prompt.structure[219 + 1] = template_gfp_tokens.structure[219 + 1]\n",
"\n",
"print(\"\".join([\"✔\" if st < 4096 else \"_\" for st in prompt.structure]))"
]
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