minor fix in refactor

.github/workflows/release.yml

@@ -0,0 +1,23 @@
+name: Release Please
+
+on:
+  push:
+    branches:
+      - main
+
+permissions:
+  contents: write
+  pull-requests: write
+
+concurrency:
+  group: release-please
+  cancel-in-progress: true
+
+jobs:
+  release:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: googleapis/release-please-action@v4
+        with:
+          release-type: python
+          package-name: psmv-rdf

.github/workflows/upload_graph.yml

@@ -15,9 +15,15 @@ jobs:
           python-version: "3.12"
           enable-caching: true
 
+      - name: Install system dependencies
+        run: sudo apt-get install -y libssh2-1-dev
+
       - name: Install dependencies
         run: uv sync
 
+      - name: Run pipeline script
+        run: uv run python service/pipeline.py
+
       - name: Upload to LINDAS
         env:
           LINDAS_USER: ${{ secrets.LINDAS_USER }}

.gitignore

@@ -90,7 +90,7 @@ psmv-data.duckdb
 shacl-documentaion-log.txt
 rdf/data/**
 rdf/processed/**
-!rdf/processed/graph.ttl
+rdf/processed/graph.ttl
 !rdf/processed/shapes.ttl
 
 # =============================================================================

README.md

@@ -72,8 +72,8 @@ psmv-rdf/
 │   └── processed/  # any automatically written/derived/merged turtle files
 ├── tests/
 ├── docs/           # project documentation
-├── .gitignore
-└── environment.yml
+├── LICENSE
+└── .gitignore
 ```
 
 ## Documentation

data/mapping/mapping_columns.yaml

@@ -1,11 +1,11 @@
 Product:
-  NK_PRODUCT: product_id # use this for unique product id or link to organisations
-  NK_PRODUCT_REF: product_ref_or_id # use this for reference to other tables
-  wNbr: w_number # 7420-1 is w number + lauf nummer from sales permission
-  NK_PI_Product: product_internal_id # parallel import ID, nur für Controlling if not nul == NK_Produkt
-  NK_SP_PRODUCT: service_provider_product_id # same as above just for Salespermission
-  NK_PRODUCT_INDICATION: product_indicator # This is what we use to link to indication, Third key - use after Update in Infofito
-  ID: record_id # is shown in psmv interface
+  NK_PRODUCT: product_id
+  NK_PRODUCT_REF: product_ref_or_id
+  wNbr: w_number
+  NK_PI_Product: product_internal_id
+  NK_SP_PRODUCT: service_provider_product_id
+  NK_PRODUCT_INDICATION: product_indicator
+  ID: record_id
   CODE: product_code
   TYPE: rdf:type
   NAME: schema:name
@@ -14,7 +14,7 @@ Product:
   exhaustionDeadline: exhaustion_deadline
   soldoutDeadline: sold_out_deadline
   isSalePermission: sale_permission
-  packageInsert: w_number_of_reference_product # pk-id from refrecne product 
+  packageInsert: w_number_of_reference_product
   terminationReason: termination_reason
 
 Organisation:
@@ -117,21 +117,21 @@ ApplicationComment:
 
 ProductCodeR:
   NK_Codetable: code_id
-  NK_PROD_REF: product_id
+  NK_PROD_REF: product_ref_or_id
 
 ProductCodeS:
   NK_codetable: code_id
-  NK_PROD_REF: product_id
+  NK_PROD_REF: product_ref_or_id
 
 ProductDangerSymbol:
   NK_Codetable: code_id
-  NK_PROD_REF: product_id
+  NK_PROD_REF: product_ref_or_id
 
 ProductSignalWords:
   NK_Codetable: code_id
   NK_SignalWord: signal_word_id
-  NK_PROD_REF: product_id
+  NK_PROD_REF: product_ref_or_id
 
 ProductProductCategory:
   NK_Codetable: code_id
-  NK_Product: product_id
+  NK_Product: product_ref_or_id

pyproject.toml

@@ -6,8 +6,8 @@ build-backend = "setuptools.build_meta"
 name = "psmv-rdf"
 version = "0.1.0"
 description = "Pipeline for converting the Swiss plant protection product registry (PSMV) into RDF linked data."
-readme = "README.md"
-license = { text = "MIT" }
+readme = { file = "README.md", content-type = "text/markdown" }
+license = { file = "LICENSE" }
 authors = [
     { name = "BLV-OSAV-USAV" }
 ]
@@ -36,11 +36,8 @@ dev = [
 ]
 
 [project.scripts]
-# Allows running the pipeline from the command line after install:
-# $ psmv-rdf
-psmv-rdf = "src.python.pipeline:main"
+psmv-rdf = "service.pipeline:run_pipeline"
 
 [tool.setuptools.packages.find]
 where = ["."]
-include = ["src*"]
-
+include = ["src*"]