Interactive simulation#129

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dane1122 wants to merge 50 commits into

interactive_simulation

Commits on Jan 31, 2017

integrating LAMMPS into MDT
dane1122
committed

Commits on Feb 2, 2017

Commits on Feb 4, 2017

Commits on Feb 6, 2017

Commits on Feb 7, 2017

Commits on Feb 9, 2017

Commits on Feb 10, 2017

Modified force equation
dane1122
committed

Commits on Feb 13, 2017

Commits on Feb 17, 2017

Fixed model
dane1122
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Commits on Feb 18, 2017

Modified for web assembly usage
dane1122
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Commits on Feb 22, 2017

Removed export since not required anymore
dane1122
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Commits on Mar 3, 2017

fixed simulation boz
dane1122
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Commits on Apr 3, 2017

Create a function to possibly use for LAMMPS-related workflows
Dayeong Lee
committed

Commits on Apr 7, 2017

Lammps model and integrator
Dayeong Lee
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Set simulation box larger than atom xlo, xhi, ylo, yhi, zlo, zhi coords to ensure that molecule can move around
Dayeong Lee
committed

Commits on Apr 11, 2017

Revert "Set simulation box larger than atom xlo, xhi, ylo, yhi, zlo, zhi coords to ensure that molecule can move around"
Dayeong Lee
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Fixed bug: can still run dynamics with potential model
Dayeong Lee
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Removed moldesign-examples directory since examples should be in moldesign/_notebooks directory
Dayeong Lee
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Updated test
Dayeong Lee
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Merge branch 'master' into interactive_simulation
Dayeong Lee
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Fixed error caused by merging master.
Dayeong Lee
committed