dockerfile

Dockerfile

@@ -0,0 +1,93 @@
+# Start with Ubuntu base image
+FROM ubuntu:16.04
+
+MAINTAINER AstroVPK <vishal.kasliwal@gmail.com>
+
+# For SSH access and port redirection
+ENV ROOTPASSWORD sample
+
+# Turn off prompts during installations
+ENV DEBIAN_FRONTEND noninteractive
+RUN echo "debconf shared/accepted-oracle-license-v1-1 select true" | debconf-set-selections
+RUN echo "debconf shared/accepted-oracle-license-v1-1 seen true" | debconf-set-selections
+
+# Update packages
+RUN apt-get -y update
+
+# Install system tools / libraries
+RUN apt-get -y install python3-software-properties \
+    software-properties-common \
+    bzip2 \
+    ssh \
+    net-tools \
+    vim \
+    curl \
+    expect \
+    git \
+    nano \
+    wget \
+    build-essential \
+    dialog \
+    make \
+    build-essential \
+    checkinstall \
+    bridge-utils \
+    virt-viewer \
+    python-pip \
+    python-setuptools \
+    python-dev \
+    g++ \
+    cmake \
+    man \
+    gfortran \
+    cpio
+
+# Install MKL
+WORKDIR /tmp
+RUN wget http://registrationcenter-download.intel.com/akdlm/irc_nas/tec/15816/l_mkl_2019.5.281_online.tgz 
+RUN tar -xzf l_mkl_2019.5.281_online.tgz
+WORKDIR /tmp/l_mkl_2019.5.281_online
+RUN sed -i 's/ACCEPT_EULA=decline/ACCEPT_EULA=accept/g' silent.cfg && \
+sed -i 's/ACTIVATION_TYPE=exist_lic/ACTIVATION_TYPE=trial_lic/g' silent.cfg && \
+./install.sh -s silent.cfg && \
+# Clean up
+cd .. && rm -rf *
+
+# CONDA
+WORKDIR /tmp
+RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda2-latest-Linux-x86_64.sh -O ~/miniconda.sh && \
+    /bin/bash ~/miniconda.sh -b -p /opt/conda && \
+    rm ~/miniconda.sh && \
+    /opt/conda/bin/conda clean -tipsy && \
+    ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
+    echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
+    echo "conda activate base" >> ~/.bashrc
+ENV PATH=/opt/conda/bin:$PATH \
+# http://bugs.python.org/issue19846
+# > At the moment, setting "LANG=C" on a Linux system *fundamentally breaks Python 3*, and that's not OK.
+    LANG=C.UTF-8
+
+# NLOPT
+RUN wget https://github.com/stevengj/nlopt/archive/v2.6.1.tar.gz  -O nlopt.tar.gz 
+RUN tar -xvzf nlopt.tar.gz && cd nlopt-2.6.1/ && cmake . && make && make install && ldconfig && cd ..
+
+# Kali Requirements
+RUN conda install cython future pytest numpy matplotlib scipy jupyter
+RUN pip install gatspy multi_key_dict fitsio==0.9.8 acor brewer2mpl sklearn zmq psutil astropy
+
+# Install kali
+WORKDIR /home/kali
+COPY . . 
+RUN COMPILERVARS_ARCHITECTURE=intel64 . /opt/intel/compilers_and_libraries/linux/bin/compilervars.sh && \
+    . /opt/intel/mkl/bin/mklvars.sh intel64 && python setup.py build_ext
+
+RUN apt-get install dos2unix
+RUN dos2unix /home/kali/bin/setup.sh  # for those windows users
+
+# Final Setup
+SHELL ["/bin/bash", "-c"]
+RUN echo "source /home/kali/bin/setup.sh" >> ~/.bashrc
+RUN echo "DISPLAY=:0.0" >> ~/.bashrc
+
+ENTRYPOINT ["/bin/bash", "--login", "-ic"]
+CMD bash

README.md

@@ -10,6 +10,18 @@ Version: 2.0.0
 
 Install
 -------
+# Docker installation
+
+The easiest way to install is with docker. However, this does not currently include `carma_pack`.
+
+1. git clone https://github.com/AstroVPK/kali.git 
+2. `docker build -t kali .`
+3. [optional: run tests] `docker run -it --rm kali-astrovpk "pytest tests/"`
+3. For jupyter `docker run -it -e DISPLAY=:0.0 --rm -p 8888:8888 kali "jupyter notebook --no-browser --ip=0.0.0.0 --port=8888 --allow-root"`
+4. For bash `docker run -it -e DISPLAY=:0.0 --rm -p 8888:8888 kali`
+
+
+# Direct installation
 Install instructions are provided for Linux & Mac OSX machines. The following OSs have been tested