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ArneBinder / pie-modules Public

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Pointer network for multi spans#63

Open

ArneBinder wants to merge 66 commits into

mainArneBinder/pie-modules:mainfrom

pointer_network_for_multi_spansArneBinder/pie-modules:pointer_network_for_multi_spansCopy head branch name to clipboard

Conversation Commits66 (66)Checks Files changed

Open

Pointer network for multi spans#63
ArneBinder wants to merge 66 commits into
mainfrom
pointer_network_for_multi_spans

Commits

Commits on Mar 21, 2024

add use_multi_spans property
ArneBinder
committed
add todos
ArneBinder
committed
convert all AnnotationEncoderDecoder to GenerativeAnnotationEncoderDecoder, i.e. implement parse() for them
ArneBinder
committed
add LabeledMultiSpanEncoderDecoder (still without tests)
ArneBinder
committed
minor
ArneBinder
committed
handle none_id in BinaryRelationEncoderDecoder.parse()
ArneBinder
committed
fix LabeledMultiSpanEncoderDecoder.parse()
ArneBinder
committed
rename exception
ArneBinder
committed
raise error for nested / overlapping parsed spans
ArneBinder
committed
fix IncompleteEncodingException for SpanEncoderDecoderWithOffset.parse
ArneBinder
committed
better constrain the type for span_encoder_decoder in LabeledSpanEncoderDecoder and LabeledMultiSpanEncoderDecoder
ArneBinder
committed
disentangle raising DecodingSpanOverlapException and DecodingSpanNestedException
ArneBinder
committed
add EncodingException
ArneBinder
committed
add DecodingEmptySpanException, EncodingEmptySpanException, spans_have_overlap() and spans_are_nested()
ArneBinder
committed
add documentation
ArneBinder
committed
assert in SpanEncoderDecoder.encode() that span is not empty
ArneBinder
committed
fix SpanEncoderDecoder.parse() and add tests
ArneBinder
committed
add tests for SpanEncoderDecoderWithOffset.parse()
ArneBinder
committed
fix SpanEncoderDecoderWithOffset.parse()
ArneBinder
committed
add tests for LabeledSpanEncoderDecoder.parse()
ArneBinder
committed
improve thrown Exceptions and add tests for LabeledMultiSpanEncoderDecoder.encode() / .decode()
ArneBinder
committed
fix SpanEncoderDecoder.parse() for empty encoding
ArneBinder
committed
fix LabeledMultiSpanEncoderDecoder.parse() and add tests
ArneBinder
committed
add test_labeled_multi_span_encoder_decoder_parse_incomplete_with_previous_annotations()
ArneBinder
committed
add test_binary_relation_encoder_decoder_parse_incomplete() and test_binary_relation_encoder_decoder_parse_incomplete_with_previous_annotations()
ArneBinder
committed
tests for parsing loop dummy relations
ArneBinder
committed
allow to generate exact same spans again
ArneBinder
committed
adjust PointerNetworkTaskModuleForEnd2EndRE for LabeledMultiSpan (partly)
ArneBinder
committed
decoding exceptions contain remaining encoding when raised in parse()
ArneBinder
committed
use relation_encoder_decoder.parse() in decode_relations()
ArneBinder
committed
rename error identifier "index" to "negative_index"
ArneBinder
committed
outsource _parse_label and restrict labels if none was found
ArneBinder
committed
use relation_encoder_decoder.parse() in build_constraint(s)
ArneBinder
committed
implement GenerativeAnnotationEncoderDecoderWithParseWithErrors with parse_with_error_handling() and remove decode_relations()
ArneBinder
committed
minor fix
ArneBinder
committed
cleanup
ArneBinder
committed
ensure that parse_with_error_handling() does not get stuck in an infinite loop
ArneBinder
committed
fix forwarding DecodingExceptions in SpanEncoderDecoderWithOffset.parse()
ArneBinder
committed
cleanup sanity check in encode_annotations()
ArneBinder
committed
cleanup follow-up candidate / constraints creation
ArneBinder
committed
fix PrefixConstrainedLogitsProcessorWithMaximum
ArneBinder
committed
raise an exception if no follow-up candidates are found
ArneBinder
committed
enforce continuations when previously decoded spans are re-generated
ArneBinder
committed
harden _prefix_allowed_tokens_fn_with_maximum(): if the decoding failed, allow all tokens. Maybe the model can recover from this state
ArneBinder
committed
harden _prefix_allowed_tokens_fn_with_maximum(): If there is only one candidate, we add the eos token
ArneBinder
committed
_prefix_allowed_tokens_fn_with_maximum(): log a warning if get_follow_up_candidates() fails
ArneBinder
committed
LabeledSpanEncoderDecoder.parse(): check for same span with different label
ArneBinder
committed
LabeledMultiSpanEncoderDecoder.parse(): check for overlap with previous spans
ArneBinder
committed
harden decode_annotations(): catch any exception
ArneBinder
committed
increase test coverage
ArneBinder
committed
better error message
ArneBinder
committed
add test_decode_annotations_issue()
ArneBinder
committed
fix spans_have_overlap() and SpanEncoderDecoder.parse()
ArneBinder
committed
add test_decode_annotations_fuzzing()
ArneBinder
committed
fix variable name
ArneBinder
committed
speed up build_constraints()
ArneBinder
committed
add cache_decoded and to speed up get_follow_up_candidates() and use this again in build_constraints()
ArneBinder
committed
disable cache because it does not work as expected
ArneBinder
committed
add comment
ArneBinder
committed
fixes regarding #64
ArneBinder
committed
add disrespect_decoded_annotations parameter to parse_with_error_handling()
ArneBinder
committed
add constrain_with_previous_records parameter to PointerNetworkTaskModuleForEnd2EndRE
ArneBinder
committed
add test case
ArneBinder
committed
use are_nested and have_overlap from pie_modules.utils.span
ArneBinder
committed
disentangle and generalize naming
ArneBinder
committed
pre-commit
ArneBinder
committed

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