This reporsity contains scripts for reproducing results in two manuscripts related to benchmarking methods for cross-omics label transfer from single-cell RNA to ATAC data.
- “Benchmarking automated cell type annotation tools for single-cell ATAC-seq data”. Published in Frontiers in Genetics in 2022. Folder Frontiers_in_Genetics.
- "A Comprehensive Benchmarking Study on Computational Tools for Cross-omics Label Transfer from Single-cell RNA to ATAC Data". Published in G3: Genes|Genomes|Genetics in 2026. Folder G3.