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Merged
melund merged 5 commits into from
Sep 17, 2025
Merged

Update of Scaling tutorial #61

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08fbd5f
Update of Scaling tutorial
Sep 13, 2025
20753ea
Fixed file links
Sep 13, 2025
fd94d80
Fix reference to libdef and AMMR
Sep 15, 2025
6b77364
Deleted unnecessary STL/Anysuf files
Sep 17, 2025
a5a58ed
Fixed reference in MyScalingFunction.any
Sep 17, 2025
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Binary file added Scaling/Downloads/Final_Download.zip
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12 changes: 4 additions & 8 deletions Scaling/Downloads/lesson1a.Main.any
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Original file line number Diff line number Diff line change
Expand Up @@ -15,21 +15,17 @@ Main = {
// Todo. Add the model elements such as
// segments, joints, and muscles here.

AnySeg SourceFemur =
{
AnySeg SourceFemur = {
Mass = 0; Jii = {0, 0, 0};
AnyDrawSurf Surface =
{
AnyDrawSurf Surface = {
FileName = "SourceFemur.stl";
RGB = {222,202,176}/256;
};
};

AnySeg TargetFemur =
{
AnySeg TargetFemur = {
Mass = 0; Jii = {0, 0, 0};
AnyDrawSurf Surface =
{
AnyDrawSurf Surface = {
FileName = "TargetFemur.stl";
RGB = {256,256,0}/256;
};
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46 changes: 21 additions & 25 deletions Scaling/Downloads/lesson1b.Main.any
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Original file line number Diff line number Diff line change
Expand Up @@ -15,50 +15,47 @@ Main = {
// Todo. Add the model elements such as
// segments, joints, and muscles here.

AnySeg SourceFemur =
{
AnySeg SourceFemur = {
Mass = 0; Jii = {0, 0, 0};
AnyDrawSurf Surface =
{
AnyDrawSurf Surface = {
FileName = "SourceFemur.stl";
RGB = {222,202,176}/256;
};
AnyDrawSurf SurfaceMorphed =
{

AnyDrawSurf SurfaceMorphed = {
FileName = "SourceFemur.stl";
AnyFunTransform3D &ref = ..MyTransform3;
};
};

AnySeg TargetFemur =
{
AnySeg TargetFemur = {
Mass = 0; Jii = {0, 0, 0};
AnyDrawSurf Surface =
{
AnyDrawSurf Surface = {
FileName = "TargetFemur.stl";
RGB = {256,256,0}/256;
};

};

AnyFunTransform3DLin2 MyTransform =
{
AnyFunTransform3DLin2 MyTransform = {
//PreTransforms = {};
Points0 =
{{-0.00906139, 0.36453, 0.0175591}, // fovea capitis
{0.0358368, -0.0100391, -0.0162062}, // lateral anterior condyle
{0.0295267, -0.0112881, 0.0194889}, // medial anterior condyle
{0.0282045, 0.157599, -0.0172379}, // anterior mid shaft
{-0.0245689, -0.00701566, -0.0238393}, // lateral posterior condyle
{-0.0320739, -0.00877602, 0.0244234}};// medial posterior condyle
Points0 = {
{-0.00906139, 0.36453, 0.0175591}, // fovea capitis
{0.0358368, -0.0100391, -0.0162062}, // lateral anterior condyle
{0.0295267, -0.0112881, 0.0194889}, // medial anterior condyle
{0.0282045, 0.157599, -0.0172379}, // anterior mid shaft
{-0.0245689, -0.00701566, -0.0238393}, // lateral posterior condyle
{-0.0320739, -0.00877602, 0.0244234} // medial posterior condyle
};

Points1 =
{{0.289913,0.420538,0.0138931}, // fovea capitis
Points1 = {
{0.289913,0.420538,0.0138931}, // fovea capitis
{0.322038,0.433232,-0.378636}, // lateral anterior condyle
{0.289309,0.426839,-0.372994}, // medial anterior condyle
{0.328859,0.425856,-0.175012}, // anterior mid shaft
{0.306293,0.487243,-0.370319}, // lateral posterior condyle
{0.261891,0.47585,-0.372696}}; // medial posterior condyle
{0.261891,0.47585,-0.372696} // medial posterior condyle
};

Mode = VTK_LANDMARK_AFFINE;
};

Expand All @@ -68,8 +65,7 @@ Main = {
Mode = VTK_LANDMARK_RIGIDBODY;
};

AnyFunTransform3DIdentity MyTransform3 =
{
AnyFunTransform3DIdentity MyTransform3 = {
PreTransforms = {&.MyTransform,&.MyTransform2};
};

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68 changes: 33 additions & 35 deletions Scaling/Downloads/lesson1c.Main.any
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Original file line number Diff line number Diff line change
Expand Up @@ -15,55 +15,53 @@ Main = {
// Todo. Add the model elements such as
// segments, joints, and muscles here.

AnySeg SourceFemur =
{
AnySeg SourceFemur = {
Mass = 0; Jii = {0, 0, 0};
AnyDrawSurf Surface =
{
AnyDrawSurf Surface = {
FileName = "SourceFemur.stl";
RGB = {222,202,176}/256;
};
AnyDrawSurf SurfaceMorphed =
{

AnyDrawSurf SurfaceMorphed = {
FileName = "SourceFemur.stl";
AnyFunTransform3D &ref = ..MyTransform3;
};
AnyDrawSurf SurfaceMorphedRBF =
{

AnyDrawSurf SurfaceMorphedRBF = {
FileName = "SourceFemur.stl";
AnyFunTransform3D &ref = ..MyRBFTransform;
RGB={1,0,0};
};
};
}; // AnySeg SourceFemur

AnySeg TargetFemur =
{
AnySeg TargetFemur = {
Mass = 0; Jii = {0, 0, 0};
AnyDrawSurf Surface =
{
AnyDrawSurf Surface = {
FileName = "TargetFemur.stl";
RGB = {256,256,0}/256;
};

};

AnyFunTransform3DLin2 MyTransform =
{
AnyFunTransform3DLin2 MyTransform = {
//PreTransforms = {};
Points0 =
{{-0.00906139, 0.36453, 0.0175591}, // fovea capitis
{0.0358368, -0.0100391, -0.0162062}, // lateral anterior condyle
{0.0295267, -0.0112881, 0.0194889}, // medial anterior condyle
{0.0282045, 0.157599, -0.0172379}, // anterior mid shaft
{-0.0245689, -0.00701566, -0.0238393}, // lateral posterior condyle
{-0.0320739, -0.00877602, 0.0244234}};// medial posterior condyle
Points1 =
{{0.289913,0.420538,0.0138931}, // fovea capitis
Points0 = {
{-0.00906139, 0.36453, 0.0175591}, // fovea capitis
{0.0358368, -0.0100391, -0.0162062}, // lateral anterior condyle
{0.0295267, -0.0112881, 0.0194889}, // medial anterior condyle
{0.0282045, 0.157599, -0.0172379}, // anterior mid shaft
{-0.0245689, -0.00701566, -0.0238393}, // lateral posterior condyle
{-0.0320739, -0.00877602, 0.0244234} // medial posterior condyle
};

Points1 = {
{0.289913,0.420538,0.0138931}, // fovea capitis
{0.322038,0.433232,-0.378636}, // lateral anterior condyle
{0.289309,0.426839,-0.372994}, // medial anterior condyle
{0.328859,0.425856,-0.175012}, // anterior mid shaft
{0.306293,0.487243,-0.370319}, // lateral posterior condyle
{0.261891,0.47585,-0.372696}}; // medial posterior condyle
{0.261891,0.47585,-0.372696} // medial posterior condyle
};

Mode = VTK_LANDMARK_AFFINE;
};

Expand All @@ -73,12 +71,11 @@ Main = {
Mode = VTK_LANDMARK_RIGIDBODY;
};

AnyFunTransform3DIdentity MyTransform3 =
{
PreTransforms = {&.MyTransform/*,&.MyTransform2*/};
AnyFunTransform3DIdentity MyTransform3 = {
PreTransforms = {&.MyTransform§/*,&.MyTransform2*/§};
};
AnyFunTransform3DRBF MyRBFTransform =
{

AnyFunTransform3DRBF MyRBFTransform = {
PreTransforms = {&.MyTransform};
PolynomDegree = 1;
RBFDef.Type = RBF_Triharmonic;
Expand All @@ -101,6 +98,7 @@ Main = {
{-0.00084335, 0.32253400, -0.0641596}, // distal trochanteric fossa
{-0.00431680, 0.35912600, 0.0036940} // femoral COR
};

PointNames = {
"Medial_Head_Point",
"Anterior_LateralCondyle_Point",
Expand All @@ -112,7 +110,7 @@ Main = {
"Posterior_Head_Point",
"Anterior_Head_Point",
"Proximal_Head_Point",
"Infeior_Head_Point",
"Infeior_Head_Point",
"Medial_LesserTrochanter_Point",
"Distal_TrochantericFossa_Point",
"Proximal_Posterior_GreaterTrochanter_Point",
Expand All @@ -138,15 +136,15 @@ Main = {
{ 0.3519, 0.4599,-0.0355},
{ 0.3075, 0.4235, 0.0139}
};
BoundingBox =
{

BoundingBox = {
Type = BB_Cartesian;
ScaleXYZ = {2, 2, 2};
DivisionFactorXYZ = 5*{1, 1, 1};
};

BoundingBoxOnOff = On;
};

}; // MyModel

// The study: Operations to be performed on the model
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