🚨 Targets workflow failed - Review needed #10
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Merge branch 'main' into dev-adam # Conflicts: # R/get_climate_chelsa.R # _targets.R # _targets/meta/meta
Merge branch 'main' into dev-adam # Conflicts: # .gitignore
Merge branch 'main' into dev-adam # Conflicts: # .github/decrypt_secret.sh # .gitignore # R/get_climate_chelsa.R # README_files/figure-gfm/unnamed-chunk-3-1.png # _targets.R
- started working through functions auto summary below: Add functions to download and process NDVI and NDWI data from MODIS and VIIRS - Implemented `get_release_ndvi_dates_modis` to download MODIS NDVI dates and convert to UNIX format. - Created `get_release_ndvi_dates_viirs` for downloading VIIRS NDVI data with appropriate quality checks. - Added `get_release_ndwi_modis` to download the most recent MODIS NDWI layer. - Introduced helper functions for date conversion and quality assessment. - Ensured proper directory management and error handling during downloads. - Updated documentation for clarity and usage instructions.
… and VIIRS - Implemented `get_release_ndvi_dates_modis` to download MODIS NDVI dates, including functions for date conversion and error handling. - Created `get_release_ndvi_dates_viirs` for downloading VIIRS NDVI dates with appropriate quality checks. - Developed `get_release_ndwi_modis` to fetch the most recent MODIS NDWI layer, including domain formatting and raster processing. - Added error handling and release management for GitHub uploads across all functions. - Ensured compatibility with existing data structures and improved documentation for clarity.
…emma_envdata into dev-adam-appeears
… national boundary function
…ing climate data download URLs for improved accuracy and reliability.
…and clean up unused steps in targets pipeline
…eps in the GitHub Actions workflow
…add local testing for actions
…and maintain consistency.
…parameters for clarity.
…et in _targets.R for clarity.
…gmap and domain_define, remove unused parameters in domain_rasterize, and enhance target definitions in _targets.R.
…_names for improved consistency
…y function, enhance metadata handling in data processing functions
Expanded .gitignore to include more R, RStudio, targets, data, secrets, and output file patterns. Cleaned up and reorganized entries for clarity and removed merge conflict markers.
Introduces new shapefiles (remnants_shp, capenature_fires_shp), raster and NetCDF outputs (domain.tif, vegmap.tif, domain.nc, vegmap.nc), and updates or adds several functions and objects related to spatial data processing. Also updates metadata for country and domain layers, and removes the process_release_biome_raster function.
…line, update country and domain functions to write GeoParquet, and refactor elevation data retrieval with AppEEARS
…ata handling and NetCDF output
…quests, and issues
…ubdirectory and return correct path; update elevation resampling method to average.
…emnants processing, and improve NetCDF variable definitions and metadata handling.
…ndicator description, add comprehensive CRS attributes, and implement run mode for GitHub Actions.
…vegmap, improve elevation retrieval with AppEEARS, and ensure directory structure for temporary files.
… releases; update .gitignore for new data directories
- Update output path for domain bounding box to "data/target_outputs/domain_bbox.parquet" and ensure directory creation. - Convert bounding box to a simple data frame with WKT geometry before writing as parquet. - Improve GitHub release upload process with credential handling and retry logic for uploads. - Adjust cue mode for domain bounding box task based on run mode.
…ode determination
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