Repository for 2026 APHL Hackathon - Group 4
Resources for Group A Streptococcus Whole Genome Sequencing Characterization
https://pmc.ncbi.nlm.nih.gov/articles/PMC5605940/ -background for Group A Strep, WGS Characterization
https://www.cdc.gov/abcs/bact-facts/data-dashboard.html -CDC dashboard for active bacterial core surveillance
https://github.com/BenJamesMetcalf/GAS_Scripts_Reference/tree/master https://github.com/BenJamesMetcalf/JanOw_Dependencies -bioinformatics pipeline for group A strep
https://github.com/boasvdp/assembly_snptyper -snp analysis of S pyogenes using hypervirulent M1UK strain as the reference
https://bacpop.org/poppunk-databases/ -PopPUNK cluster analysis, S pyogenes database