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utils.py
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385 lines (336 loc) · 11.7 KB
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from copy import deepcopy
from functools import partial
import traceback
import numpy as np
import pandas as pd
import sklearn.metrics
import tqdm
from joblib import Parallel, delayed
# from tqdm.contrib.concurrent import process_map
from models import BinningCalibrator
import postprocess
def error_rate(y_true, y_preds, groups=None, w=None, n_groups=None):
"""Compute group-weighted error rate."""
if groups is None or w is None:
return np.mean(y_true != y_preds)
else:
if n_groups is None:
group_names, groups = np.unique(groups, return_inverse=True)
n_groups = len(group_names)
return sum([
w[a] * np.mean(y_true[groups == a] != y_preds[groups == a])
for a in range(n_groups)
])
def delta_sp(y_preds, groups, n_classes, n_groups, ord=np.inf):
"""Compute violation of statistical parity."""
pred_counts = np.array([
np.bincount(y_preds[groups == a], minlength=n_classes)
for a in range(n_groups)
])
output_dists = pred_counts / np.sum(pred_counts, axis=1, keepdims=True)
diffs = np.linalg.norm(output_dists[:, None, :] - output_dists[None, :, :],
ord=ord,
axis=2)
return np.max(diffs)
def confusion_matrix(y_true, y_preds, groups, n_classes, n_groups):
"""Compute group-wise confusion matrices (conditioned on y_true)."""
return np.array([
sklearn.metrics.confusion_matrix(y_true[groups == a],
y_preds[groups == a],
labels=np.arange(n_classes),
normalize='true')
for a in range(n_groups)
])
def delta_eo(y_true, y_preds, groups, n_classes, n_groups, ord=np.inf):
"""Compute violation of equalized odds."""
conf_mtxs = confusion_matrix(
y_true,
y_preds,
groups,
n_classes,
n_groups,
).reshape(n_groups, -1) # shape = (n_groups, n_classes**2)
with np.errstate(invalid='ignore'): # Ignore groups with no positive examples
# Pairwise differences
diffs = np.linalg.norm(conf_mtxs[:, None, :] - conf_mtxs[None, :, :],
ord=ord,
axis=2)
diffs = np.nan_to_num(diffs, nan=0.0)
return np.max(diffs)
def delta_eopp(y_true, y_preds, groups, n_classes, n_groups, ord=np.inf):
"""
Compute violation of (binary or multi-class) equalized opportunity (depending
on `n_classes`).
"""
conf_mtxs = confusion_matrix(
y_true, y_preds, groups, n_classes,
n_groups) # shape = (n_groups, n_classes, n_classes)
tprs = np.array([np.diag(conf_mtx) for conf_mtx in conf_mtxs
]) # shape = (n_groups, n_classes)
if n_classes == 2:
tprs = tprs[:, 1].reshape(-1, 1) # shape = (n_groups, 1)
with np.errstate(invalid='ignore'): # Ignore groups with no positive examples
# Pairwise differences
diffs = np.linalg.norm(tprs[:, None, :] - tprs[None, :, :], ord=ord, axis=2)
diffs = np.nan_to_num(diffs, nan=0.0)
return np.max(diffs)
def calibration_error(probas, labels, n_bins=100, seed=0):
"""Computes binned expected calibration error, with bins selected by k-means.
"""
calib = BinningCalibrator(n_bins=n_bins,
random_state=seed).fit(probas, labels)
# bins = calib.binning_fn_(probas)
# bin_to_proba = {b: probas[bins == b].mean(axis=0) for b in np.unique(bins)}
# probas_binned = np.array([bin_to_proba[b] for b in bins])
p = np.mean(probas, axis=0)
probas_cal = calib.predict_proba(probas)
p_cal = np.mean(probas_cal, axis=0)
return np.max(np.mean(np.abs(probas / p - probas_cal / p_cal), axis=0))
# Define some utility functions
def postprocess_and_evaluate(
alphas,
seeds,
criterion,
metrics,
n_test,
n_classes,
n_groups,
labels,
groups,
p_y_x=None,
p_a_x=None,
p_ay_x=None,
calibrator_y_factory=None,
calibrator_a_factory=None,
calibrator_ay_factory=None,
max_workers=1,
# postproc_kwargs=None,
return_vals=False,
print_code=False):
## This wrapper is for our algorithm defined in postprocess.PostProcessor
# if postproc_kwargs is None:
# postproc_kwargs = {}
if print_code:
if p_ay_x is not None:
print(
f'''Code for post-processing a single model (with precomputed probas):
postprocessor = postprocess.PostProcessor(
n_classes,
n_groups,
pred_ay_fn=lambda x: x, # dummy pred_fn
criterion='{criterion}',
alpha=alpha,
seed=seed,
)
postprocessor.fit(p_ay_x_postproc)
preds = postprocessor.predict(p_ay_x_test)''')
else:
print(
f'''Code for post-processing a single model (with precomputed probas):
postprocessor = postprocess.PostProcessor(
n_classes,
n_groups,
pred_a_fn=lambda x: x[0], # dummy pred_fns
pred_y_fn=lambda x: x[1],
criterion='{criterion}',
alpha=alpha,
seed=seed,
)
postprocessor.fit([p_a_x_postproc, p_y_x_postproc])
preds = postprocessor.predict((p_a_x_test, p_y_x_test))''')
kwargs = {
'postprocessor_factory': None,
'metrics': metrics,
'labels_te': None,
'groups_te': None,
'p_y_x_pp': None,
'p_y_x_te': None,
'p_a_x_pp': None,
'p_a_x_te': None,
'p_ay_x_pp': None,
'p_ay_x_te': None,
}
pp_kwargs = []
for seed in seeds:
# Split the remaining data into post-processing and test data
n = len(labels)
idx_te = np.random.default_rng(seed).choice(np.arange(n),
size=n_test,
replace=False)
idx_pp = np.setdiff1d(np.arange(n), idx_te)
labels_pp = labels[idx_pp]
groups_pp = groups[idx_pp]
labels_te = labels[idx_te]
groups_te = groups[idx_te]
kwargs['labels_te'] = labels_te
kwargs['groups_te'] = groups_te
def calibrate(calibrator_factory, probas_pp, targets_pp, probas_te):
calib = calibrator_factory()
calib.fit(probas_pp.reshape(len(probas_pp), -1), targets_pp)
probas_pp = calib.predict_proba(probas_pp.reshape(
len(probas_pp), -1)).reshape(probas_pp.shape)
probas_te = calib.predict_proba(probas_te.reshape(
len(probas_te), -1)).reshape(probas_te.shape)
return probas_pp, probas_te
if p_y_x is not None:
p_y_x_pp = p_y_x[idx_pp]
p_y_x_te = p_y_x[idx_te]
if calibrator_y_factory is not None:
p_y_x_pp, p_y_x_te = calibrate(calibrator_y_factory, p_y_x_pp,
labels_pp, p_y_x_te)
kwargs['p_y_x_pp'] = p_y_x_pp
kwargs['p_y_x_te'] = p_y_x_te
if p_a_x is not None:
p_a_x_pp = p_a_x[idx_pp]
p_a_x_te = p_a_x[idx_te]
if calibrator_a_factory is not None:
p_a_x_pp, p_a_x_te = calibrate(calibrator_a_factory, p_a_x_pp,
groups_pp, p_a_x_te)
kwargs['p_a_x_pp'] = p_a_x_pp
kwargs['p_a_x_te'] = p_a_x_te
if p_ay_x is not None:
p_ay_x_pp = p_ay_x[idx_pp]
p_ay_x_te = p_ay_x[idx_te]
if calibrator_ay_factory is not None:
p_ay_x_pp, p_ay_x_te = calibrate(calibrator_ay_factory, p_ay_x_pp,
groups_pp * n_classes + labels_pp,
p_ay_x_te)
kwargs['p_ay_x_pp'] = p_ay_x_pp
kwargs['p_ay_x_te'] = p_ay_x_te
for alpha in alphas:
kwargs['postprocessor_factory'] = partial(
postprocess.PostProcessor,
alpha=alpha,
seed=seed,
n_classes=n_classes,
n_groups=n_groups,
criterion=criterion,
# **postproc_kwargs,
)
pp_kwargs.append(deepcopy(kwargs))
if max_workers == 1:
res = []
for a in pp_kwargs:
res.append(postprocess_and_evaluate_(a))
# print(res[-1]) # to monitor progress
else:
res = Parallel(n_jobs=max_workers)(
delayed(postprocess_and_evaluate_)(pp_kwargs[i])
for i in tqdm.tqdm(range(len(pp_kwargs))))
## process_map does not work with sklearn
# res = process_map(
# postprocess_and_evaluate_,
# pp_kwargs,
# max_workers=max_workers,
# )
# each r in res is (alpha, seed, metrics, postprocessor)
ret = pd.DataFrame([{
'alpha': alpha,
**result
} for alpha, _, result, _ in res if result is not None])
ret = ret.groupby('alpha').agg(['mean', np.std]).sort_index(ascending=False)
if return_vals:
return ret, res
return ret
def dict_get_key(d, k):
return d[k]
def postprocess_and_evaluate_(kwargs):
postprocessor_factory = kwargs['postprocessor_factory']
metrics = kwargs['metrics']
labels_te = kwargs['labels_te']
groups_te = kwargs['groups_te']
p_a_x_pp = kwargs['p_a_x_pp']
p_a_x_te = kwargs['p_a_x_te']
p_y_x_pp = kwargs['p_y_x_pp']
p_y_x_te = kwargs['p_y_x_te']
p_ay_x_pp = kwargs['p_ay_x_pp']
p_ay_x_te = kwargs['p_ay_x_te']
postprocessor = postprocessor_factory()
n_classes = postprocessor.n_classes
n_groups = postprocessor.n_groups
alpha = postprocessor.alpha
seed = postprocessor.seed
try:
# Post-process the predicted probabilities
if postprocessor.alpha == np.inf:
if p_y_x_te is None:
p_y_x_te = p_ay_x_te.sum(axis=1)
preds_te = p_y_x_te.argmax(axis=1)
else:
postprocessor.fit(None, p_a_x_pp, p_y_x_pp, p_ay_x_pp)
# Evaluate the post-processed model
preds_te = postprocessor.predict(None, p_a_x_te, p_y_x_te, p_ay_x_te)
except Exception:
print(
f"Post-processing failed with alpha={alpha} and seed={seed}:\n{traceback.format_exc()}",
flush=True)
return alpha, seed, None, None
return alpha, seed, evaluate(labels_te,
preds_te,
groups_te,
n_groups=n_groups,
n_classes=n_classes,
metrics=metrics), postprocessor
def evaluate(test_labels,
test_preds,
test_groups,
n_groups=2,
n_classes=2,
metrics=[]):
result = {}
for metric in metrics:
if metric == 'accuracy':
result[metric] = 1 - error_rate(
test_labels,
test_preds,
test_groups,
n_groups=n_groups,
)
elif metric.startswith('delta_sp'):
result[metric] = delta_sp(
test_preds,
test_groups,
n_classes=n_classes,
n_groups=n_groups,
ord=2 if metric.endswith('rms') else np.inf,
) / (np.sqrt(n_classes) if metric.endswith('rms') else 1)
elif metric.startswith('delta_eopp'):
result[metric] = delta_eopp(
test_labels,
test_preds,
test_groups,
n_classes=n_classes,
n_groups=n_groups,
ord=2 if metric.endswith('rms') else np.inf,
) / (np.sqrt(n_classes) if
(metric.endswith('rms') and n_classes > 2) else 1)
elif metric.startswith('delta_eo'):
result[metric] = delta_eo(
test_labels,
test_preds,
test_groups,
n_classes=n_classes,
n_groups=n_groups,
ord=2 if metric.endswith('rms') else np.inf,
) / (n_classes if metric.endswith('rms') else 1)
elif metric.startswith('dist'):
label = int(metric.split('_')[-1])
result[metric] = (test_preds == label).mean()
return result
def plot_results(ax, df, x_col, y_col, label=None, **kwargs):
if 'fmt' not in kwargs:
kwargs['fmt'] = '-'
markers, caps, bars = ax.errorbar(
df[x_col]['mean'].values,
df[y_col]['mean'].values,
xerr=df[x_col]['std'].values,
yerr=df[y_col]['std'].values,
lw=2,
label=label,
**kwargs,
)
for b in bars:
b.set_alpha(0.4)
ax.set_xlabel(x_col)
ax.set_ylabel(y_col)
ax.grid(True, which="both", zorder=0)