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cde_id54326112biospecimen_anatomic_siteXSubmitted Tumor Sample Primary Anatomic Siteterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=4742851&version=1.0 source caDSRcde_version1.0 cde_id4742851$shortest_dimensionhTissue Sample Short Dimension Millimeter Measurementterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5432603&version=1.0 source -caDSRcde_version1.0 cde_id5432603 tumor_descriptorJTumor Tissue Disease Description Typeterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=3288124&version=1.0 source -caDSRcde_version1.0 cde_id32881248method_of_sample_procurement8Method of Sample Procurement&preservation_methodLTissue Sample Preservation Method Typeterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5432521&version=1.0 source +caDSRcde_version1.0 cde_id54326038method_of_sample_procurement8Method of Sample 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Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC basic_statisticsQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC.per_sequence_gc_contentQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC8sequence_length_distributionQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC$per_base_n_contentQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC2per_base_sequence_contentQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQCkmer_contentQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC$percent_gc_content%GCterm_urlàhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/1%20Basic%20Statistics.html source FastQCtotal_sequencesTotal Sequencesterm_urlàhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/1%20Basic%20Statistics.html source FastQCparticipantprojectprojects familyfamilies - lost_to_followup8Patient Lost Follow-Up Ind-2term_urlÄhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=61333&version=3.0 source -caDSRcde_version3.0 cde_id -613330days_to_lost_to_followupprimary_sitePrimary Sitedisease_typeDisease Typeindex_date(aligned_reads_metric$alignment_workflow&alignment_workflowsdemographicparticipantparticipants cause_of_death(Patient Death Reasonterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2554674&version=3.0 source -caDSRcde_version3.0 cde_id2554674 gender.Person Gender Text Typeterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2200604&version=3.0 source -caDSRcde_version3.0 cde_id2200604race$Race Category Textterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2192199&version=1.0 source -caDSRcde_version1.0 cde_id21921994age_at_last_follow_up_daysvital_status(Patient Vital Statusterm_url¼https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5&version=5.0 source -caDSRcde_version5.0 cde_id5ethnicity4Ethnic Group Category Textterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2192217&version=2.0 source -caDSRcde_version2.0 cde_id2192217&family_relationshipparticipantparticipants6somatic_annotation_workflow.simple_somatic_mutation0simple_somatic_mutationsphenotypeparticipantparticipantsdata_releaseroot -roots,biospecimen_supplementparticipantparticipants0germline_variation_index2simple_germline_variation4simple_germline_variationsaliquot samplesamples>normal_tumor_genotype_snp_matchJNormal Tumor Genotype Match Indicatorterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=4588156&version=1.0 source -caDSRcde_version1.0 cde_id4588156 aliquot_quantity8Biospecimen Aliquot Quantity6ribosomal_rna_28s_16s_ratio628s/18s Ribosomal RNA Ratiowell_number`Biospecimen Analyte or Aliquot Plate Well Numberterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5432613&version=1.0 source -caDSRcde_version1.0 cde_id5432613analyte_typeBMolecular Specimen Type Text Nameterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2513915&version=2.0 source -caDSRcde_version2.0 cde_id2513915 analyte_quantity8Biospecimen Analyte Quantity volume4Biospecimen Aliquot Volumea260_a280_ratio–Nucleic Acid Absorbance at 260 And Absorbance at 280 DNA Purity Ratio Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5432595&version=1.0 source -caDSRcde_version1.0 cde_id5432595concentrationªBiospecimen Analyte or Aliquot Extracted Concentration Milligram per Milliliter Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5432594&version=1.0 source -caDSRcde_version1.0 cde_id54325940spectrophotometer_method”Purification Nucleic Acid Solution Concentration Determination Method Typeterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=3008378&version=1.0 source -caDSRcde_version1.0 cde_id3008378,somatic_mutation_index.simple_somatic_mutation0simple_somatic_mutations4annotated_somatic_mutation6annotated_somatic_mutationsread_groupaliquotaliquotsRINLBiospecimen RNA Integrity Number Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5278775&version=1.0 source -caDSRcde_version1.0 cde_id5278775aligned_reads$alignment_workflow&alignment_workflowsread_groupread_groups2submitted_unaligned_reads>submitted_unaligned_reads_files.submitted_aligned_reads:submitted_aligned_reads_files2submitted_unaligned_readsread_groupread_groups&aligned_reads_index.submitted_aligned_reads:submitted_aligned_reads_filesaligned_reads&aligned_reads_filesstudy_fileprojectprojects4annotated_somatic_mutation6somatic_annotation_workflow8somatic_annotation_workflowsannotationparticipantparticipants samplesamples -slide slidesaliquotaliquots&clinical_supplement(clinical_supplements,biospecimen_supplement.biospecimen_supplementsread_groupread_groups.submitted_aligned_readsread_groupread_groups.simple_somatic_mutationBsomatic_mutation_calling_workflowDsomatic_mutation_calling_workflows$alignment_workflow.submitted_aligned_reads:submitted_aligned_reads_files2submitted_unaligned_reads>submitted_unaligned_reads_filesinvestigatorprojectprojects&clinical_supplementparticipantparticipantsprojectprogramprograms +caDSRcde_version1.0 cde_id5432591$alignment_workflow.submitted_aligned_reads:submitted_aligned_reads_files2submitted_unaligned_reads>submitted_unaligned_reads_files(aligned_reads_metric$alignment_workflow&alignment_workflows0germline_variation_index2simple_germline_variation4simple_germline_variations2submitted_unaligned_readsread_groupread_groupsmedical_historyparticipantparticipantsslide_image +slide slides,somatic_mutation_index.simple_somatic_mutation0simple_somatic_mutations4annotated_somatic_mutation6annotated_somatic_mutationsannotationparticipantparticipants samplesamples +slide slidesaliquotaliquots&clinical_supplement(clinical_supplements,biospecimen_supplement.biospecimen_supplementsread_groupread_groupsoutcomeparticipantparticipants4annotated_somatic_mutation6somatic_annotation_workflow8somatic_annotation_workflowsdiagnosisparticipantparticipants"primary_diagnosis:Neoplasm Histologic Type Nameterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=3081934&version=3.0 source +caDSRcde_version3.0 cde_id3081934read_group_qc.submitted_aligned_reads:submitted_aligned_reads_files2submitted_unaligned_reads>submitted_unaligned_reads_filesread_groupread_groupsencodingEncodingterm_urlàhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/1%20Basic%20Statistics.html source FastQC2per_base_sequence_qualityQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC6sequence_duplication_levelsQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC basic_statisticsQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC2per_base_sequence_contentQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQCkmer_contentQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC$percent_gc_content%GCterm_urlàhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/1%20Basic%20Statistics.html source FastQCtotal_sequencesTotal Sequencesterm_urlàhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/1%20Basic%20Statistics.html source FastQCadapter_contentQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC8sequence_length_distributionQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC4per_sequence_quality_scoreQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC2per_tile_sequence_qualityQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC.per_sequence_gc_contentQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC$per_base_n_contentQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC2overrepresented_sequencesQC Metric Stateterm_urlªhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/ source FastQC&aligned_reads_index.submitted_aligned_reads:submitted_aligned_reads_filesaligned_reads&aligned_reads_filesprogram&clinical_supplementparticipantparticipantsaligned_reads$alignment_workflow&alignment_workflowsread_groupread_groups2submitted_unaligned_reads>submitted_unaligned_reads_files.submitted_aligned_reads:submitted_aligned_reads_filesprojectprogramprograms slide samplesamples(percent_tumor_nucleirMalignant Neoplasm Neoplasm Nucleus Percentage Cell Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2841225&version=1.0 source -caDSRcde_version1.0 cde_id2841225>percent_eosinophil_infiltrationLSpecimen Eosinophilia Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2897700&version=2.0 source -caDSRcde_version2.0 cde_id2897700(percent_normal_cells^Malignant Neoplasm Normal Cell Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2841233&version=1.0 source -caDSRcde_version1.0 cde_id2841233:percent_monocyte_infiltration^Specimen Monocyte Infiltration Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5455535&version=1.0 source -caDSRcde_version1.0 cde_id5455535>percent_lymphocyte_infiltrationbSpecimen Lymphocyte Infiltration Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2897710&version=2.0 source -caDSRcde_version2.0 cde_id2897710>percent_neutrophil_infiltration€Malignant Neoplasm Neutrophil Infiltration Percentage Cell Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2841267&version=1.0 source -caDSRcde_version1.0 cde_id2841267 percent_necrosisXMalignant Neoplasm Necrosis Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2841237&version=1.0 source +caDSRcde_version1.0 cde_id2841225:percent_monocyte_infiltration^Specimen Monocyte Infiltration Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5455535&version=1.0 source +caDSRcde_version1.0 cde_id5455535(percent_normal_cells^Malignant Neoplasm Normal Cell Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2841233&version=1.0 source +caDSRcde_version1.0 cde_id2841233>percent_eosinophil_infiltrationLSpecimen Eosinophilia Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2897700&version=2.0 source +caDSRcde_version2.0 cde_id2897700>percent_lymphocyte_infiltrationbSpecimen Lymphocyte Infiltration Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2897710&version=2.0 source +caDSRcde_version2.0 cde_id2897710*percent_stromal_cells`Malignant Neoplasm Stromal Cell Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2841241&version=1.0 source +caDSRcde_version1.0 cde_id2841241 percent_necrosisXMalignant Neoplasm Necrosis Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2841237&version=1.0 source caDSRcde_version1.0 cde_id2841237@percent_granulocyte_infiltrationdSpecimen Granulocyte Infiltration Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2897705&version=2.0 source caDSRcde_version2.0 cde_id28977054number_proliferating_cells^Pathology Review Slide Proliferating Cell Countterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5432636&version=1.0 source -caDSRcde_version1.0 cde_id5432636*percent_stromal_cells`Malignant Neoplasm Stromal Cell Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2841241&version=1.0 source -caDSRcde_version1.0 cde_id28412416percent_inflam_infiltrationZSpecimen Inflammation Change Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2897695&version=1.0 source +caDSRcde_version1.0 cde_id5432636>percent_neutrophil_infiltration€Malignant Neoplasm Neutrophil Infiltration Percentage Cell Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2841267&version=1.0 source +caDSRcde_version1.0 cde_id28412676percent_inflam_infiltrationZSpecimen Inflammation Change Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2897695&version=1.0 source caDSRcde_version1.0 cde_id2897695&percent_tumor_cellsHSpecimen Tumor Cell Percentage Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5432686&version=1.0 source -caDSRcde_version1.0 cde_id5432686diagnosisparticipantparticipants"primary_diagnosis:Neoplasm Histologic Type Nameterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=3081934&version=3.0 source -caDSRcde_version3.0 cde_id3081934"analysis_metadata.submitted_aligned_reads:submitted_aligned_reads_filesoutcomeparticipantparticipantsrootDgermline_mutation_calling_workflow.submitted_aligned_reads:submitted_aligned_reads_filesaligned_reads&aligned_reads_filestk«_÷Âc0•Q1 \ No newline at end of file +caDSRcde_version1.0 cde_id5432686participantprojectprojects familyfamilies +disease_typeDisease Type lost_to_followup8Patient Lost Follow-Up Ind-2term_urlÄhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=61333&version=3.0 source +caDSRcde_version3.0 cde_id +61333index_date0days_to_lost_to_followupprimary_sitePrimary Site.simple_somatic_mutationBsomatic_mutation_calling_workflowDsomatic_mutation_calling_workflows"analysis_metadata.submitted_aligned_reads:submitted_aligned_reads_filesrun_metadataread_groupread_groupsinvestigatorprojectprojectsread_groupaliquotaliquotsRINLBiospecimen RNA Integrity Number Valueterm_urlÈhttps://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5278775&version=1.0 source +caDSRcde_version1.0 cde_id52787752simple_germline_variationDgermline_mutation_calling_workflowFgermline_mutation_calling_workflowsread_groupread_groupsaligned_reads&aligned_reads_filesstudy_fileprojectprojects¯X5íxw¼€‡ÛcªOq \ No newline at end of file