diff --git a/vadcprod/vpodc.data-commons.org/values/values.yaml b/vadcprod/vpodc.data-commons.org/values/values.yaml index 9e1959b85..e631de202 100644 --- a/vadcprod/vpodc.data-commons.org/values/values.yaml +++ b/vadcprod/vpodc.data-commons.org/values/values.yaml @@ -62,55 +62,6 @@ etl: esEndpoint: elasticsearch etlMapping: mappings: - - name: etl_mickey_case - doc_type: case - type: aggregator - root: case - props: - - name: project_id - - name: submitter_id - nested_props: - - name: clinical_demographics - path: clinical_demographics - props: - - name: Ethnicity - - name: Gender - - name: Race - - name: oncology_primaries - path: oncology_primaries - props: - - name: ICDOSite - - name: Stagegroupclinical - - name: Texthistologytitle - - name: Gradedifferentiation - - name: Stagegroupbest - - name: somatic_mutations - path: somatic_mutations - props: - - name: Gene - - name: Mutation - joining_props: - - index: file - join_on: _case_id - props: - - name: object_id - src: object_id - fn: set - - name: data_format - src: data_format - fn: set - - name: data_type - src: data_type - fn: set - - name: data_category - src: data_category - fn: set - - name: modality - src: modality - fn: set - - name: body_part_examined - src: body_part_examined - fn: set - name: etl_mickey_file doc_type: file type: collector @@ -224,8 +175,6 @@ guppy: indices: - index: etl_mickey type: patients - - index: etl_mickey_case - type: case - index: etl_mickey_file type: file - index: omop_etl_index_cohortb_20251119