From c045dd815f8036b52f70c46d8b935adcfc05a229 Mon Sep 17 00:00:00 2001
From: Krishna Agarwal <159047652+krishnaa05@users.noreply.github.com>
Date: Wed, 24 Jun 2026 14:16:51 -0500
Subject: [PATCH] Update to uv

---
 .github/workflows/integration_tests.yaml | 23 +++++++++++------------
 1 file changed, 11 insertions(+), 12 deletions(-)

diff --git a/.github/workflows/integration_tests.yaml b/.github/workflows/integration_tests.yaml
index 74e18917..873c3aca 100644
--- a/.github/workflows/integration_tests.yaml
+++ b/.github/workflows/integration_tests.yaml
@@ -270,11 +270,10 @@ jobs:
               if [[ "$REPO" == "gen3sdk-python" ]]; then
                 sed -i "s|^gen3 = \".*\"|gen3 = { git = \"https://github.com/uc-cdis/gen3sdk-python\", rev = \"$BRANCH\" }|" pyproject.toml
               fi
-              pip install poetry
-              poetry lock
-              poetry install
-              poetry show
-              sudo apt update && poetry run playwright install-deps && poetry run playwright install --with-deps chromium
+              pip install uv
+              uv sync
+              uv pip list
+              sudo apt update && uv run playwright install-deps && uv run playwright install --with-deps chromium
               sudo apt install openjdk-11-jre -y
 
           # Configure credentials to access cluster.
@@ -430,7 +429,7 @@ jobs:
               mkdir $HOME/.gen3
               mkdir logs
               echo "****** Prepare CI Environment ******" > logs/gh_action_logs.txt
-              if ! poetry run python -m gen3_ci.scripts.prepare_ci_environment >> logs/gh_action_logs.txt 2>&1; then
+              if ! uv run python -m gen3_ci.scripts.prepare_ci_environment >> logs/gh_action_logs.txt 2>&1; then
                 echo "PR_ERROR_MSG=Failed to Prepare CI environment" >> $GITHUB_ENV
                 exit 1
               fi
@@ -466,7 +465,7 @@ jobs:
             run: |
               echo -e "\n\n************ Run tests ************" >> logs/gh_action_logs.txt
               mkdir output
-              poetry run pytest --video=retain-on-failure -n logical -m "${{ inputs.SERVICE_TO_TEST }} and not wip" --alluredir allure-results --no-header --dist loadscope ${{ env.TEST_LABEL }} >> logs/gh_action_logs.txt 2>&1
+              uv run pytest --video=retain-on-failure -n logical -m "${{ inputs.SERVICE_TO_TEST }} and not wip" --alluredir allure-results --no-header --dist loadscope ${{ env.TEST_LABEL }} >> logs/gh_action_logs.txt 2>&1
               if [ $? -ne 0 ]; then
                 echo "PR_ERROR_MSG=Test(s) failures encountered in PR" >> $GITHUB_ENV
               fi
@@ -478,7 +477,7 @@ jobs:
             run: |
               echo -e "\n\n************ Run tests ************" >> logs/gh_action_logs.txt
               mkdir output
-              poetry run pytest --video=retain-on-failure -n logical -m "not wip" --alluredir allure-results --no-header --dist loadscope ${{ env.TEST_LABEL }} >> logs/gh_action_logs.txt 2>&1
+              uv run pytest --video=retain-on-failure -n logical -m "not wip" --alluredir allure-results --no-header --dist loadscope ${{ env.TEST_LABEL }} >> logs/gh_action_logs.txt 2>&1
               if [ $? -ne 0 ]; then
                 echo "PR_ERROR_MSG=Test(s) failures encountered in PR" >> $GITHUB_ENV
               fi
@@ -492,7 +491,7 @@ jobs:
             run: |
               echo -e "\n\n************ Rerunning failed tests ************" >> logs/gh_action_logs.txt 2>&1
               mv output/report.md output/report_run_before_rerun.md
-              poetry run pytest --video=retain-on-failure -n logical -m "not wip" --alluredir rerun-allure-results --no-header --dist loadscope --last-failed --last-failed-no-failures=none >> logs/gh_action_logs.txt 2>&1
+              uv run pytest --video=retain-on-failure -n logical -m "not wip" --alluredir rerun-allure-results --no-header --dist loadscope --last-failed --last-failed-no-failures=none >> logs/gh_action_logs.txt 2>&1
               if [ $? -ne 0 ]; then
                 echo "PR_ERROR_MSG=Test(s) failures encountered in PR" >> $GITHUB_ENV
               fi
@@ -640,7 +639,7 @@ jobs:
             id: generate_slack_report
             if: ${{ env.SKIP_TESTS != 'true' && inputs.EXTERNAL_TO_CTDS != 'true' && (steps.upload_allure_report.outcome == 'success' || steps.upload_gh_action_logs.outcome == 'success') }}
             continue-on-error: true # if this fails, we still need to run clean-up steps
-            run: poetry run python -m gen3_ci.scripts.generate_slack_report
+            run: uv run python -m gen3_ci.scripts.generate_slack_report
 
           - name: Publish report to Slack
             id: slack_notify
@@ -659,7 +658,7 @@ jobs:
             continue-on-error: true  # if this fails, we still need to run clean-up steps
             run: |
               echo -e "\n\n****** Running Analyze Failures using AI agent ******" >>  logs/gh_action_logs.txt
-              poetry run python -m gen3_ci.scripts.analyze_failed_tests_using_ai_agent >> logs/gh_action_logs.txt 2>&1
+              uv run python -m gen3_ci.scripts.analyze_failed_tests_using_ai_agent >> logs/gh_action_logs.txt 2>&1
               if [[ "$IS_NIGHTLY_RUN" == "true" ]]; then
                 DATE=$(date +%Y%m%d)
                 aws s3 cp logs/failure_analysis.txt s3://ci-allure-reports/nightly-run-$CI_ENV/$DATE/$RUN_NUM/$ATTEMPT_NUM/failure_analysis.txt >> logs/gh_action_logs.txt 2>&1
@@ -690,4 +689,4 @@ jobs:
           - name: Cleanup
             if: ${{ env.SKIP_TESTS != 'true' }}
             run: |
-              poetry run python -m gen3_ci.scripts.teardown_ci_env
+              uv run python -m gen3_ci.scripts.teardown_ci_env