From 18170df4d09dee8d596815d98683bfc9b7a9dbfe Mon Sep 17 00:00:00 2001 From: Tayab Soomro Date: Tue, 19 Dec 2023 23:36:53 -0600 Subject: [PATCH 1/2] Update kraken2 database download link The older link is no longer functional and therefore this PR updates it to a working link obtained from here:https://benlangmead.github.io/aws-indexes/k2#:~:text=.tar.gz-,Minikraken,-v2 --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 0eed172..93201f1 100644 --- a/README.md +++ b/README.md @@ -112,7 +112,7 @@ You need to install a [Kraken](https://ccb.jhu.edu/software/kraken/) database (~ You need to install a [Kraken2](https://ccb.jhu.edu/software/kraken2/) database (~8 GB). - wget ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/minikraken2_v2_8GB_201904_UPDATE.tgz + wget https://genome-idx.s3.amazonaws.com/kraken/minikraken2_v2_8GB_201904.tgz tar -C $HOME -zxvf minikraken2_v2_8GB_201904_UPDATE.tgz #### Centrifuge From c85842d03bb32687b0a542f79a277b3c014b2c0e Mon Sep 17 00:00:00 2001 From: Tayab Soomro Date: Tue, 19 Mar 2024 02:35:26 -0600 Subject: [PATCH 2/2] Update filename Fix the name of the tar file that is to be extracted in the instructions --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 93201f1..dea8075 100644 --- a/README.md +++ b/README.md @@ -113,7 +113,7 @@ You need to install a [Kraken](https://ccb.jhu.edu/software/kraken/) database (~ You need to install a [Kraken2](https://ccb.jhu.edu/software/kraken2/) database (~8 GB). wget https://genome-idx.s3.amazonaws.com/kraken/minikraken2_v2_8GB_201904.tgz - tar -C $HOME -zxvf minikraken2_v2_8GB_201904_UPDATE.tgz + tar -C $HOME -zxvf minikraken2_v2_8GB_201904.tgz #### Centrifuge