ci.yml

name: continuous-integration

on: [push]

jobs:
  test:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest]
        # Requirements file generated with python=3.11 
        python-version: ["3.11"]
    steps:
    - uses: actions/checkout@v4
    - uses: conda-incubator/setup-miniconda@v3
      with:
        activate-environment: openms
        python-version: ${{ matrix.python-version }}
        channels: defaults,bioconda,conda-forge

    - name: Install OpenMS
      run: |
        conda install openms -y
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install -r requirements.txt # test with requirements file so can easily bump with dependabot
        pip install pytest
    - name: Test
      run: |
        python -m pytest test_gui.py tests/