diff --git a/content/about/code_of_conduct/_index.md b/content/about/code_of_conduct/_index.md index 1e0bcff..f4d7628 100644 --- a/content/about/code_of_conduct/_index.md +++ b/content/about/code_of_conduct/_index.md @@ -35,4 +35,4 @@ The group is making decisions independently from the project, PyData, NumFOCUS o You can learn more about the current group members, as well as the reporting procedure on the [NumFOCUS Code of Conduct][] page. -[NumFOCUS Code of Conduct](https://numfocus.org/code-of-conduct) +[NumFOCUS Code of Conduct]: https://numfocus.org/code-of-conduct diff --git a/content/about/roles/_index.md b/content/about/roles/_index.md index 34675d8..ccf5780 100644 --- a/content/about/roles/_index.md +++ b/content/about/roles/_index.md @@ -27,7 +27,7 @@ among other possibilities. Any community member can become a contributor, and all are encouraged to do so. By contributing to the project, community members can directly help to shape its future. -All community members are required to adhere to our [code of conduct](https://scverse.org/about/code_of_conduct/). +All community members are required to adhere to our [code of conduct](/about/code_of_conduct/). Potential contributors are encouraged to read the [Contributing Guide](https://scanpy.readthedocs.io/en/stable/dev/index.html). A community member becomes a contributor when the following criteria are met: diff --git a/content/blog/hello-world.md b/content/blog/hello-world.md index dd6875c..5a2efb5 100644 --- a/content/blog/hello-world.md +++ b/content/blog/hello-world.md @@ -26,7 +26,7 @@ There are already a few visible outcomes of our joint work including improved [mudata documentation](https://mudata.readthedocs.io/en/latest/). Additionally, [scvi-tools is now using MuData](https://github.com/scverse/scvi-tools/pull/1444) for the representation of multimodal data. [Scanpy has gained new workshop notebooks](https://github.com/scverse/scanpy-tutorials/pull/52), and, moreover, we have started -[a collection of learning resources for scverse libraries](https://scverse.org/learn/). +[a collection of learning resources for scverse libraries](/learn/). We've also prepared [a template for developers](https://github.com/scverse/cookiecutter-scverse) to help them to jump-start their new libraries. @@ -35,7 +35,7 @@ to help them to jump-start their new libraries. **scverse** is explicitly an effort beyond just a single research group. As a community effort we strive for interoperability, shared growth, and democratized governance. -In our initial form, we have divided responsibilities into several [roles](https://scverse.org/people/), including: +In our initial form, we have divided responsibilities into several [roles](/people/), including: [Isaac Virshup](https://github.com/ivirshup), [Danila Bredikhin](https://github.com/gtca) and [Lukas Heumos](https://github.com/Zethson) form the steering committee and also belong to the core developers together with [Adam Gayoso](https://github.com/adamgayoso), [Giovanni Palla](https://github.com/giovp), [Gregor Sturm](https://github.com/grst), and [Ilia Kats](https://github.com/ilia-kats). The core developers have made significant contributions to the ecosystem and are jointly developing and maintaining the major libraries. diff --git a/content/events/2022_05_hackathon.md b/content/events/2022_05_hackathon.md index e9604fa..8723d9c 100644 --- a/content/events/2022_05_hackathon.md +++ b/content/events/2022_05_hackathon.md @@ -12,7 +12,7 @@ The scverse hackathon is free. The event was invite only. We will try to make fu ## Hackathon checklist -- Check that you agree with the [scverse code of conduct](https://scverse.org/about/code_of_conduct/). +- Check that you agree with the [scverse code of conduct](/about/code_of_conduct/). - Ensure that you have a [Github](https://github.com/) account. - Join our [zulip](https://scverse.zulipchat.com/) where you'll be added to the hackathon stream. [Say hi](https://scverse.zulipchat.com/#narrow/stream/319076-introductions) if this is your first time on the scverse zulip! - Have [python](https://www.python.org/) and any scverse package that you might work on installed. diff --git a/content/events/2022_12_hackathon.md b/content/events/2022_12_hackathon.md index 161fc1b..88e267c 100644 --- a/content/events/2022_12_hackathon.md +++ b/content/events/2022_12_hackathon.md @@ -12,7 +12,7 @@ The scverse hackathon is free. The event was invite only. We will try to make fu ## Hackathon checklist -- Check that you agree with the [scverse code of conduct](https://scverse.org/about/code_of_conduct/). +- Check that you agree with the [scverse code of conduct](/about/code_of_conduct/). - Ensure that you have a [Github](https://github.com/) account. - Join our [zulip](https://scverse.zulipchat.com/) where you'll be added to the hackathon stream. [Say hi](https://scverse.zulipchat.com/#narrow/stream/319076-introductions) if this is your first time on the scverse zulip! - Have [python](https://www.python.org/) and any scverse package that you might work on installed. diff --git a/content/events/2023_04_hackathon.md b/content/events/2023_04_hackathon.md index 8ac3c2a..c3b6007 100644 --- a/content/events/2023_04_hackathon.md +++ b/content/events/2023_04_hackathon.md @@ -71,7 +71,7 @@ See [this hackmd](https://hackmd.io/JTTFFI6kRHm2U7WSpsWJjg) for more information ## Hackathon checklist -- Check that you agree with the [scverse code of conduct](https://scverse.org/about/code_of_conduct/). +- Check that you agree with the [scverse code of conduct](/about/code_of_conduct/). - Ensure that you have a [Github](https://github.com/) account. - Join our [zulip](https://scverse.zulipchat.com/) where you'll be added to the hackathon stream. [Say hi](https://scverse.zulipchat.com/#narrow/stream/319076-introductions) if this is your first time on the scverse zulip! - Have [python](https://www.python.org/) and any scverse package that you might work on installed. diff --git a/content/events/2024_09_conference.md b/content/events/2024_09_conference.md index a6fae92..2b00432 100644 --- a/content/events/2024_09_conference.md +++ b/content/events/2024_09_conference.md @@ -7,6 +7,6 @@ draft = false Join us for the first scverse conference taking place from **Tuesday, September 10** to **Thursday, September 12** in **Munich, Germany**. Stay tuned for the registrations, speaker announcements, and more! -[The registration is now open!](https://scverse.org/conference2024/) +[The registration is now open!](/conference2024/) - Save the date info card, highlighting speakers and workshops as well as the September 10-12th date and Munich location + Save the date info card, highlighting speakers and workshops as well as the September 10-12th date and Munich location diff --git a/content/events/_index.md b/content/events/_index.md index 5b4017d..4f4a90d 100644 --- a/content/events/_index.md +++ b/content/events/_index.md @@ -9,7 +9,7 @@ everyone! If you are new to scverse, these meetings are a great way to get to kn the people behind the project. We usually start off the meetings with a short presentation about a development-related -topic or a new [ecosystem package](https://scverse.org/packages/#ecosystem). +topic or a new [ecosystem package](/packages/#ecosystem). The meetings have an [open agenda](https://hackmd.io/VfVLKb3ETGKN2j_7tn8ZJQ?edit). If you would like to bring up a topic, feel free to add it before or during the meeting! diff --git a/content/learn/_index.md b/content/learn/_index.md index 1612c94..b198fe7 100644 --- a/content/learn/_index.md +++ b/content/learn/_index.md @@ -39,8 +39,8 @@ You can also find recordings of past talks and workshops on our [YouTube channel name = "Other modalities" [[tutorials.section]] name = "TCR and BCR receptor sequencing with scirpy" - url = "https://scverse.org/scirpy/latest/tutorials/tutorial_3k_tcr.html" - img = "https://scverse.org/scirpy/latest/_images/tutorials_tutorial_3k_tcr_86_1.png" + url = "https://scirpy.scverse.org/en/latest/tutorials/tutorial_3k_tcr.html" + img = "https://scirpy.scverse.org/en/latest/_static/scirpy_logo.png" [[tutorials.section]] name = "ATAC-seq" url = "https://muon-tutorials.readthedocs.io/en/latest/single-cell-rna-atac/pbmc10k/2-Chromatin-Accessibility-Processing.html" diff --git a/layouts/blog/list.html b/layouts/blog/list.html index 36081c6..ba14e05 100644 --- a/layouts/blog/list.html +++ b/layouts/blog/list.html @@ -1,7 +1,7 @@ {{ define "main" }}

Blog

{{ range .Pages }} - +
{{ .Date.Format "January 02, 2006" }} diff --git a/layouts/events/list.html b/layouts/events/list.html index ff394d7..66af8f4 100644 --- a/layouts/events/list.html +++ b/layouts/events/list.html @@ -7,7 +7,7 @@

{{ .Title }}

{{ with where .Data.Pages "Date.Unix" ">" now.Unix }}

Upcoming events

{{ range . }} - +