From f25fb97c461052715c579de92dc3ae721c95901e Mon Sep 17 00:00:00 2001
From: ori-kron-wis <ori.kronfeld@weizmann.ac.il>
Date: Sun, 16 Aug 2026 15:04:34 +0300
Subject: [PATCH 1/2] Adding meta.yaml's for scviva-tools and scib-metrics

---
 packages/scib-metrics/meta.yaml | 24 +++++++++++++++++++++
 packages/scviva-tools/meta.yaml | 37 +++++++++++++++++++++++++++++++++
 2 files changed, 61 insertions(+)
 create mode 100644 packages/scib-metrics/meta.yaml
 create mode 100644 packages/scviva-tools/meta.yaml

diff --git a/packages/scib-metrics/meta.yaml b/packages/scib-metrics/meta.yaml
new file mode 100644
index 00000000..1005ebc1
--- /dev/null
+++ b/packages/scib-metrics/meta.yaml
@@ -0,0 +1,24 @@
+name: scib-metrics
+description: |
+  scib-metrics provides accelerated, Python-only implementations of the scIB metrics for
+  benchmarking single-cell data integration methods, using JAX for jit-compilation and
+  hardware acceleration.
+project_home: https://github.com/YosefLab/scib-metrics
+documentation_home: https://scib-metrics.readthedocs.io/
+tutorials_home: https://scib-metrics.readthedocs.io/en/latest/tutorials.html
+publications:
+  - 10.1038/s41592-021-01336-8 # scIB benchmarking paper, Nat Methods 2022
+install:
+  pypi: scib-metrics
+primary_category: scRNA-seq
+tags:
+  - data integration
+  - benchmarking
+  - GPU acceleration
+license: BSD-3-Clause
+language: Python
+contact:
+  - adamgayoso
+  - ori-kron-wis
+test_command: hatch test
+category: ecosystem
diff --git a/packages/scviva-tools/meta.yaml b/packages/scviva-tools/meta.yaml
new file mode 100644
index 00000000..e05e15e1
--- /dev/null
+++ b/packages/scviva-tools/meta.yaml
@@ -0,0 +1,37 @@
+name: scviva-tools
+description: |
+  scviva-tools is a consolidated spatial transcriptomics analysis toolkit built on scvi-tools,
+  providing niche-aware representation learning (scVIVA), deconvolution (DestVI, Stereoscope),
+  noise correction (ResolVI), imputation (GIMVI), and spatial mapping (Tangram) as first-class,
+  interoperable models.
+project_home: https://github.com/YosefLab/scviva-tools
+documentation_home: https://scviva-tools.readthedocs.io/
+tutorials_home: https://scviva-tools.readthedocs.io/en/latest/tutorials/index.html
+publications:
+  - 10.1038/s41587-021-01206-w # Scvi-tools library paper, NBT 2022
+  - 10.1038/s41587-022-01272-8 # DestVI
+  - 10.1101/2025.01.20.634005 # resolVI
+  - 10.1101/2025.06.01.657182 # scVIVA
+  - 10.1101/2025.11.11.687271 # Harreman
+  - 10.1186/s13059-024-03419-z # VIVS
+  - 10.48550/arXiv.1905.02269 # gimVI
+  - 10.1038/s42003-020-01247-y # Stereoscope
+  - 10.1038/s41592-021-01264-7 # Tangram
+  - 10.1038/s41587-021-01139-4 # Cell2location
+  - 10.64898/2026.01.15.699786 # CSDE
+install:
+  pypi: scviva-tools
+primary_category: Spatial
+tags:
+  - spatial transcriptomics
+  - deconvolution
+  - denoising
+  - data integration
+  - deep learning
+  - probabilistic modeling
+license: BSD-3-Clause
+language: Python
+contact:
+  - ori-kron-wis
+test_command: hatch test
+category: ecosystem

From 15a265717a48b9cc62803cf3fef47ccb936f117e Mon Sep 17 00:00:00 2001
From: ori-kron-wis <ori.kronfeld@weizmann.ac.il>
Date: Sun, 16 Aug 2026 15:22:44 +0300
Subject: [PATCH 2/2] added correct link

---
 packages/scib-metrics/meta.yaml | 2 +-
 packages/scviva-tools/meta.yaml | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/scib-metrics/meta.yaml b/packages/scib-metrics/meta.yaml
index 1005ebc1..389d0e2c 100644
--- a/packages/scib-metrics/meta.yaml
+++ b/packages/scib-metrics/meta.yaml
@@ -5,7 +5,7 @@ description: |
   hardware acceleration.
 project_home: https://github.com/YosefLab/scib-metrics
 documentation_home: https://scib-metrics.readthedocs.io/
-tutorials_home: https://scib-metrics.readthedocs.io/en/latest/tutorials.html
+tutorials_home: https://scib-metrics.readthedocs.io/page/tutorials.html
 publications:
   - 10.1038/s41592-021-01336-8 # scIB benchmarking paper, Nat Methods 2022
 install:
diff --git a/packages/scviva-tools/meta.yaml b/packages/scviva-tools/meta.yaml
index e05e15e1..15f9f7d3 100644
--- a/packages/scviva-tools/meta.yaml
+++ b/packages/scviva-tools/meta.yaml
@@ -6,7 +6,7 @@ description: |
   interoperable models.
 project_home: https://github.com/YosefLab/scviva-tools
 documentation_home: https://scviva-tools.readthedocs.io/
-tutorials_home: https://scviva-tools.readthedocs.io/en/latest/tutorials/index.html
+tutorials_home: https://scviva-tools.readthedocs.io/page/tutorials/index.html
 publications:
   - 10.1038/s41587-021-01206-w # Scvi-tools library paper, NBT 2022
   - 10.1038/s41587-022-01272-8 # DestVI