diff --git a/packages/scib-metrics/meta.yaml b/packages/scib-metrics/meta.yaml new file mode 100644 index 00000000..389d0e2c --- /dev/null +++ b/packages/scib-metrics/meta.yaml @@ -0,0 +1,24 @@ +name: scib-metrics +description: | + scib-metrics provides accelerated, Python-only implementations of the scIB metrics for + benchmarking single-cell data integration methods, using JAX for jit-compilation and + hardware acceleration. +project_home: https://github.com/YosefLab/scib-metrics +documentation_home: https://scib-metrics.readthedocs.io/ +tutorials_home: https://scib-metrics.readthedocs.io/page/tutorials.html +publications: + - 10.1038/s41592-021-01336-8 # scIB benchmarking paper, Nat Methods 2022 +install: + pypi: scib-metrics +primary_category: scRNA-seq +tags: + - data integration + - benchmarking + - GPU acceleration +license: BSD-3-Clause +language: Python +contact: + - adamgayoso + - ori-kron-wis +test_command: hatch test +category: ecosystem diff --git a/packages/scviva-tools/meta.yaml b/packages/scviva-tools/meta.yaml new file mode 100644 index 00000000..15f9f7d3 --- /dev/null +++ b/packages/scviva-tools/meta.yaml @@ -0,0 +1,37 @@ +name: scviva-tools +description: | + scviva-tools is a consolidated spatial transcriptomics analysis toolkit built on scvi-tools, + providing niche-aware representation learning (scVIVA), deconvolution (DestVI, Stereoscope), + noise correction (ResolVI), imputation (GIMVI), and spatial mapping (Tangram) as first-class, + interoperable models. +project_home: https://github.com/YosefLab/scviva-tools +documentation_home: https://scviva-tools.readthedocs.io/ +tutorials_home: https://scviva-tools.readthedocs.io/page/tutorials/index.html +publications: + - 10.1038/s41587-021-01206-w # Scvi-tools library paper, NBT 2022 + - 10.1038/s41587-022-01272-8 # DestVI + - 10.1101/2025.01.20.634005 # resolVI + - 10.1101/2025.06.01.657182 # scVIVA + - 10.1101/2025.11.11.687271 # Harreman + - 10.1186/s13059-024-03419-z # VIVS + - 10.48550/arXiv.1905.02269 # gimVI + - 10.1038/s42003-020-01247-y # Stereoscope + - 10.1038/s41592-021-01264-7 # Tangram + - 10.1038/s41587-021-01139-4 # Cell2location + - 10.64898/2026.01.15.699786 # CSDE +install: + pypi: scviva-tools +primary_category: Spatial +tags: + - spatial transcriptomics + - deconvolution + - denoising + - data integration + - deep learning + - probabilistic modeling +license: BSD-3-Clause +language: Python +contact: + - ori-kron-wis +test_command: hatch test +category: ecosystem