From c4c912791640d30883adc56aa1d5de8a903024b0 Mon Sep 17 00:00:00 2001
From: Zicheng Wang <zw3672@gmail.com>
Date: Tue, 24 Mar 2026 10:17:17 -0400
Subject: [PATCH 1/3] Add ncountr package metadata

---
 packages/ncountr/meta.yaml | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)
 create mode 100644 packages/ncountr/meta.yaml

diff --git a/packages/ncountr/meta.yaml b/packages/ncountr/meta.yaml
new file mode 100644
index 00000000..f931d9e5
--- /dev/null
+++ b/packages/ncountr/meta.yaml
@@ -0,0 +1,24 @@
+name: ncountr
+description: |
+  ncountr is the first Python package for end-to-end Nanostring nCounter gene expression analysis.
+  It provides RCC file parsing, quality control, normalization, differential expression testing,
+  and gene set scoring. Results can be exported as AnnData objects for downstream analysis
+  with scanpy and the broader scverse ecosystem.
+project_home: https://github.com/princello/ncountr
+documentation_home: https://ncountr.readthedocs.io/
+tutorials_home: https://ncountr.readthedocs.io/page/vignettes/
+install:
+  pypi: ncountr
+license: MIT
+tags:
+  - gene-expression
+  - nanostring
+  - ncounter
+  - normalization
+  - differential-expression
+version: v0.1.0
+contact:
+  - princello
+test_command: |
+  pip install ".[dev]" && pytest
+category: ecosystem

From 5b85087f8c84cefafc54696423cdd4b2c0428d98 Mon Sep 17 00:00:00 2001
From: Zicheng Wang <zw3672@gmail.com>
Date: Thu, 6 Aug 2026 11:00:38 -0400
Subject: [PATCH 2/3] Set ncountr version to 0.2.0 to match PyPI release

---
 packages/ncountr/meta.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/ncountr/meta.yaml b/packages/ncountr/meta.yaml
index f931d9e5..02ca49a1 100644
--- a/packages/ncountr/meta.yaml
+++ b/packages/ncountr/meta.yaml
@@ -16,7 +16,7 @@ tags:
   - ncounter
   - normalization
   - differential-expression
-version: v0.1.0
+version: 0.2.0
 contact:
   - princello
 test_command: |

From c3d33808e6badc72204aff5244f77715de7e4da1 Mon Sep 17 00:00:00 2001
From: Zicheng Wang <zw3672@gmail.com>
Date: Fri, 4 Sep 2026 14:58:54 -0400
Subject: [PATCH 3/3] Update ncountr metadata for the tightened registry schema

- tags now drawn from the controlled vocabulary
- add the newly required primary_category and language
- drop version, which is readOnly in the schema and derived from the
  package index at build time
---
 packages/ncountr/meta.yaml | 15 ++++++++-------
 1 file changed, 8 insertions(+), 7 deletions(-)

diff --git a/packages/ncountr/meta.yaml b/packages/ncountr/meta.yaml
index 02ca49a1..333531a2 100644
--- a/packages/ncountr/meta.yaml
+++ b/packages/ncountr/meta.yaml
@@ -9,14 +9,15 @@ documentation_home: https://ncountr.readthedocs.io/
 tutorials_home: https://ncountr.readthedocs.io/page/vignettes/
 install:
   pypi: ncountr
-license: MIT
+primary_category: bulk RNA-seq
 tags:
-  - gene-expression
-  - nanostring
-  - ncounter
-  - normalization
-  - differential-expression
-version: 0.2.0
+  - bulk RNA-seq
+  - preprocessing
+  - quality control
+  - differential expression
+  - functional analysis
+license: MIT
+language: Python
 contact:
   - princello
 test_command: |