diff --git a/test/integration/FileContentsTest_complex_fastqc_data.approved.txt b/test/integration/FileContentsTest_complex_fastqc_data.approved.txt index b967956..bac5c2c 100644 --- a/test/integration/FileContentsTest_complex_fastqc_data.approved.txt +++ b/test/integration/FileContentsTest_complex_fastqc_data.approved.txt @@ -6,8 +6,9 @@ File type Conventional base calls Encoding Illumina 1.5 Total Sequences 5 Total Bases 80 bp -Sequences flagged as poor quality 0 Sequence length 16 +Mean Length 16.0 +Median Length 16 %GC 50 >>END_MODULE >>Per base sequence quality pass diff --git a/test/integration/FileContentsTest_complex_fastqc_report.approved.html b/test/integration/FileContentsTest_complex_fastqc_report.approved.html index 3e032bd..a1cea06 100644 --- a/test/integration/FileContentsTest_complex_fastqc_report.approved.html +++ b/test/integration/FileContentsTest_complex_fastqc_report.approved.html @@ -248,11 +248,15 @@

rank50) { - return(i); - } - runningCount += lengthCounts[i]; + if (runningCount > rank) { + return i; + } } - - throw new RuntimeException("Should never fail to find a value above the 50th percentile"); - } - + throw new RuntimeException("Should never fail to find a value above the rank"); + } + private synchronized void calculateDistribution () { int maxLen = 0; int minLen = -1;